Protein Info for GFF2599 in Sphingobium sp. HT1-2

Annotation: Quinohemoprotein amine dehydrogenase alpha subunit (EC 1.4.99.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03908: quinohemoprotein amine dehydrogenase, alpha subunit" amino acids 41 to 576 (536 residues), 585.8 bits, see alignment E=3.3e-180 PF09098: Dehyd-heme_bind" amino acids 47 to 178 (132 residues), 104 bits, see alignment E=1.3e-33 PF14930: Qn_am_d_aII" amino acids 230 to 345 (116 residues), 103.1 bits, see alignment E=1.9e-33 PF09099: Qn_am_d_aIII" amino acids 349 to 435 (87 residues), 68.9 bits, see alignment E=7.6e-23 PF09100: Qn_am_d_aIV" amino acids 440 to 575 (136 residues), 156.1 bits, see alignment E=8.8e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>GFF2599 Quinohemoprotein amine dehydrogenase alpha subunit (EC 1.4.99.-) (Sphingobium sp. HT1-2)
VKQLPVKFGLLALFSASVVLAQGGSGADGGSDGATMKETEEGIPVTDPLVQEKCGSCHAP
DAKGNLSRISWVRTTPEGWAQAIKRMVRLNGLPITPEESRAVIKSLSASHGLAPEEARPV
MYLPEKRIIDEVMPNETMRGACASCHAFAQPLSWRRSKLEWKTLQDLHVALYSQADAQYR
RPAEDSEQPAGRDPKDKMTRGEYALTYLPKVAGLHTPEWAAWSSRLRAPRLAGDWLVVAS
VPGQGRFVGTMTVAPGAAADEFKTSASLTSLTNGATISRSGTGLVYSGYSWRGSSRGGAT
PGKPDDLGSPARETMWFAPDQQRAEGRWFWGEYQEFGYDVKLVRATAAPAILAVTPGAVK
AGAKGVDVTIWGHNLPASLTAADVDLGAGVTVARVVSATPGKAVLSVDVTDGAAAGQRDV
GIGGAVLEKAFPVYRKVDYLKVTPETSLARLGGTKFAKGYQQFEAIGYDNGLDGKPNTGD
DVAIGPVDATWSMQEFMSVYYDDDMKYVGALSPTAFFTPGLEGPNPERRFSRNNYGEVWV
VATAKAEKDKFGKPLSARSYLVVTVPMYQRFDQPEVSR