Protein Info for PS417_13175 in Pseudomonas simiae WCS417

Annotation: iron transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 118 to 142 (25 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details PF03239: FTR1" amino acids 1 to 265 (265 residues), 221.7 bits, see alignment E=6.3e-70

Best Hits

Swiss-Prot: 58% identical to EFEU_YERPN: Ferrous iron permease EfeU (efeU) from Yersinia pestis bv. Antiqua (strain Nepal516)

KEGG orthology group: K07243, high-affinity iron transporter (inferred from 97% identity to pfs:PFLU2921)

Predicted SEED Role

"Ferrous iron transport permease EfeU"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UKW0 at UniProt or InterPro

Protein Sequence (277 amino acids)

>PS417_13175 iron transporter (Pseudomonas simiae WCS417)
MLVPFLIMLREGIEAALIVGIIASYLQQTGRGQWMPAVWIGVFLAAALALLVGGGLELVS
AEFPQKQQELFEGVVGLVAVGILSSMVFWMRKVARSIKHSLHESLDHALAGSKHQVTALI
LMVFFAVAREGLETVFFLLAVFQQSEGPAAPIGALLGLILAIIVGFLIYTGSMRLNLGAF
FRWTGLFILVVAAGILANSVQALHEAGVWNHLQTVLFDFSAALPMDSPLGSVLAGMFGYQ
EAPTISTLGAYLIYLVVALVMFFLPTAPATPSSVSSQ