Protein Info for GFF2582 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1588 transmembrane" amino acids 279 to 306 (28 residues), see Phobius details PF20148: DUF6531" amino acids 400 to 473 (74 residues), 74.4 bits, see alignment 1.2e-24 PF05593: RHS_repeat" amino acids 694 to 728 (35 residues), 33.2 bits, see alignment (E = 8.2e-12) amino acids 756 to 790 (35 residues), 25.6 bits, see alignment (E = 2e-09) amino acids 797 to 832 (36 residues), 33.7 bits, see alignment (E = 5.8e-12) amino acids 839 to 875 (37 residues), 29.4 bits, see alignment (E = 1.3e-10) amino acids 972 to 1005 (34 residues), 24.5 bits, see alignment (E = 4.5e-09) amino acids 1194 to 1233 (40 residues), 27.1 bits, see alignment (E = 6.7e-10) amino acids 1217 to 1248 (32 residues), 25.7 bits, see alignment (E = 1.8e-09) TIGR01643: YD repeat (two copies)" amino acids 694 to 723 (30 residues), 27.9 bits, see alignment (E = 2.5e-10) amino acids 776 to 816 (41 residues), 32.9 bits, see alignment (E = 6.4e-12) amino acids 818 to 858 (41 residues), 24.6 bits, see alignment (E = 2.7e-09) amino acids 860 to 892 (33 residues), 19.1 bits, see alignment (E = 1.4e-07) amino acids 966 to 991 (26 residues), 16.7 bits, see alignment (E = 8.1e-07) amino acids 992 to 1023 (32 residues), 20.6 bits, see alignment (E = 4.7e-08) amino acids 1013 to 1050 (38 residues), 24.7 bits, see alignment (E = 2.4e-09) amino acids 1217 to 1248 (32 residues), 27.1 bits, see alignment (E = 4.3e-10) PF03527: RHS" amino acids 1299 to 1332 (34 residues), 63.6 bits, see alignment (E = 1.8e-21) TIGR03696: RHS repeat-associated core domain" amino acids 1325 to 1404 (80 residues), 94.1 bits, see alignment 5.6e-31

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_1676)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1588 amino acids)

>GFF2582 hypothetical protein (Pseudomonas sp. DMC3)
MEAIARIEQELDSFPQTLSLYRKQLDHWLSRRADQISEAADLPSLVGMERIIRFGDSSTS
VSSSDDEFSSSVVQCPHGGLMQIESKFESVYDIPLGNISVDVVDVDSGKTAPVTLDQQGK
GEFRGDEGKFYRVLVHSAVTSSQVDELFKSYDGLTGELERWLRSEWQGFKPQWSQSVATA
ASNGMLAGSWAAIEGVWDSLGLLSEILQDPGKFAERLGSGAAELIELAQTAPDLMEKLQL
LVSDEAAMCLLLRSASLWLDMLPPSEVAGKSAEVASMMIVQLIIDVLISVVLTFVGAGAG
IAYLTLRLADRATQLFNVAKRLVKALFSIVNGFIEYVDRYKAVAARGIAAGVKKGRMQLR
WDAKRNAMLKKDEPHDDAPDQAKNPNGDAADCVPNTCKNGCPVSMVTGEELLTLTDAVLD
GVLPFEFTRLYRSSAVEIDIGLGFGWSHTLAHRLSFDGDGVIWIDHENRRTRFPLPNVAR
PAIHNSLSRAAIFLGDEPEELILALAGDSARFYHFRAGRLTAISDVYGNRLTLQRDRSDR
IQRLDNGAGRALLLRYDRAQLVAVDYQVFVQGEWITEQNLATYSFDARQRLLVATNAVGD
SERYDYDDHHVILQRQLTGGASFFWEWQREGKAARCVRHWASFSQMNTRYVWNDDDASVT
VHYVDGTEEVYVHDERARLVRQVAADGGEQLKAYDQQGRLIAEQDALGAVTEYRYDELGR
LIALIPPDDAPTSYEYRNGFLYKRCRGDAVWIYRRNAEGAVTEAVDPDGQVTHYYYNLRG
QLLSLRYPDSSRHRWVWNELGQLIEETLPDGGVRRFSYDALGRRITTQDEFGVVSRQQWD
AAGRLILTTSPTGSTRAYSYGAYGQITAERDELGRITRYEYDDDLHLVSRRVNPDGTRVQ
YRYDHARLLLTEIENESGEKYRLDYTPTGLIRQEIGFDGRRTAYVYDLNGHLLEKTEFGE
QGLSLVTRYERDAAGRLRVKTLPDGLKVRYDCDRLGRLIGVDDGQNHPLAFEYDRQDRLI
TEHQGWGTLRYAYDACGQLKRMRLPDNSKLDYHYAKGGALSAIDLNGTPLTRHVYQSGRE
QQRQQGLLLSEYSYDDQGRLLAHAVGHRHASLYRRDYAYSANGNLEHIADSRHGQRTYGY
DALDRLIRVRHSRDELPESFAHDPAGNLLMQDRPGPAQIKGNRLLMQGDRHYDYDAFGNL
IRERRGHGQTLVTEYRYDCQHRLIGLTRPDGQTATYHYDAFGRRIRKTVDSAVTEFFWQG
EHLVAESSTTQYRSFLYEPGTFRPLAMLDGKGPKKACPFYYQLDHLGTPQELTDYSGEIV
WSAQYDAYGKVAAVTLAGEDYLDQPLRFQGQYFDVESGLHYNRHRYYDPRLGRYLTPDPV
KLAGGLNQYQYVPNPTGWVDPLGLTSNCPPPNKPGCEVPGGIGGAKVDDGEPALPKMTAQ
ERRARIDELAEENAYRRLHEMENPQNGEHFLEKHGAQTTLRSQFERIMTGKNPTTGVIET
YTGGSHHGEPKIPSAATHFFSHRDQLNAIYRAKLIFRQTNLQTSRRPMDMGKIIGEGYTR
DGIYGQQRKAVVILRANGDTVTSYADFE