Protein Info for PS417_13095 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 215 to 241 (27 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 275 (257 residues), 75.8 bits, see alignment E=1.6e-25 amino acids 252 to 387 (136 residues), 34.6 bits, see alignment E=5.1e-13

Best Hits

Swiss-Prot: 55% identical to Y3873_PSEAB: Uncharacterized MFS-type transporter PA14_38730 (PA14_38730) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2815)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UHM7 at UniProt or InterPro

Protein Sequence (391 amino acids)

>PS417_13095 MFS transporter (Pseudomonas simiae WCS417)
MSAAAPSSLSITLQIVSIVFYTFIAFICIGLPIAVIPGYVHEQLGFSAVVAGVTIGSQYL
ATLLSRPMAGRMSDTVGTKRAIVLGLAGILVSGVLTFFATCLQSMPALSLSILIVGRLLL
GVAQGLIGVGTISWCMGAVGAEHTARSISWNGIASYGAIAIGAPLGVVMVAEYGYNSLGI
ALAVLSALGLVLIRNKPSVPVVRGERLPFWAVFGRIAPFGASLCLASIGYGTLTTFITLY
YLNRGWAGAAYCLTVFGVCFILSRLVFISAISRFGGFRAAIACMTIETLGLTLLWLAPST
GVALIGAGLTGFGLSLVYPALGVEAIKQVPNSSRGAGLSAYAVFFDLALAIAGPLMGAVA
LNLGYGWIFFCAALLSVTALGVTLLLKRRAY