Protein Info for GFF2557 in Xanthobacter sp. DMC5

Annotation: Solute-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF03480: DctP" amino acids 46 to 323 (278 residues), 305.3 bits, see alignment E=2.2e-95 TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 53 to 293 (241 residues), 245.4 bits, see alignment E=3.2e-77

Best Hits

Swiss-Prot: 50% identical to DCTP1_POLSJ: Solute-binding protein Bpro_3107 (Bpro_3107) from Polaromonas sp. (strain JS666 / ATCC BAA-500)

KEGG orthology group: None (inferred from 85% identity to azc:AZC_3338)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>GFF2557 Solute-binding protein (Xanthobacter sp. DMC5)
MLTRRRLTSRAVALTLSGLALSGLALSGLALSALPAMAQTTLRSADIHPDGYPTVDSVKY
FGEIIEKKSNGKYKVQVFSSGQLGGEKDTIEQTRFGVIDLNRVNTAPFNNLIPETAVLGM
PFLFRSTDHMYKVVDGPIGAEIAKAFEPHGLVVLGFFDSGARSMYNSKKPIKTLDDMKGM
KIRVQQSDLFIGMINALGANATPMPFGELYSALQTGLVDGAENNYPSYDSVKHYEVAKYY
SLTEHSLAPEVFVMSKRAFDKLSPDDQKMFKEAGLQATQKMRELWAKRDAEAKDRVVKGG
AIINEVDKKPFIDAMKPVYDKFVTTDKMKDLVARIRAVN