Protein Info for PS417_13035 in Pseudomonas simiae WCS417

Annotation: aldehyde dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 transmembrane" amino acids 248 to 267 (20 residues), see Phobius details amino acids 758 to 777 (20 residues), see Phobius details PF20256: MoCoBD_2" amino acids 44 to 167 (124 residues), 81.6 bits, see alignment E=1.4e-26 amino acids 579 to 685 (107 residues), 56.3 bits, see alignment E=7.6e-19 PF02738: MoCoBD_1" amino acids 311 to 547 (237 residues), 97.5 bits, see alignment E=1.4e-31 PF00034: Cytochrom_C" amino acids 798 to 896 (99 residues), 29.2 bits, see alignment E=3.9e-10 amino acids 954 to 1048 (95 residues), 22.1 bits, see alignment E=6.3e-08 amino acids 1067 to 1148 (82 residues), 29.9 bits, see alignment 2.3e-10 PF13442: Cytochrome_CBB3" amino acids 1067 to 1147 (81 residues), 36.4 bits, see alignment 1.1e-12

Best Hits

Swiss-Prot: 76% identical to NICB_PSEPK: Nicotinate dehydrogenase subunit B (nicB) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU2803)

MetaCyc: 76% identical to nicotinate hydroxylase large subunit (Pseudomonas putida KT2440)
NICOTINATE-DEHYDROGENASE-RXN [EC: 1.17.2.1]

Predicted SEED Role

"Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)" in subsystem N-heterocyclic aromatic compound degradation (EC 1.3.99.16)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.16

Use Curated BLAST to search for 1.17.2.1 or 1.3.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBP1 at UniProt or InterPro

Protein Sequence (1175 amino acids)

>PS417_13035 aldehyde dehydrogenase (Pseudomonas simiae WCS417)
MTDTSLSRDQWLAKTGVLLIIDDVLPPSGPVAKGGTPTVKPKELGLFIAVNDDGLVYAFN
GHVDLGTGIRTSLAQIVAEELDLTMEQVKMVLGDTERVPNQGATIASATLQISAVPLRNA
AAEARRFLLARAAGRLGVSTASLKVDAGVIHAADGRTTTYAELVSGQHDQLRISGDAPLK
PIEDYRLVGKGAARVDIPGKATGELTYVHDMRVPGMLHGRVIRPPYAGLDCGDFVGNSLL
SVDESSIAHIPGIVAVVVIRDFVGVVALREEQAVKAASELQVHWKPWNHGLPDMTDVEQA
IRDNPRVRRTVLDQGNVDEALAGASQRMPRSYLWPYQMHGSIGPSCGVADYSPAGSRVWS
GSQNPHLLRADLAWLLACDEALIDVIRMEAAGCYGRNCADDVCADALLLSRAVGKPVRVQ
LTREQEHLWEPKGTAQLMDVDGGLNADGSIAAYDFETSYPSNGAPTLALLLTGRVEPVAA
MFEMGDRTSIPPYDIDTMRVTINDMAPIVRASWMRGVSALPNTFAHESYIDELAFAAGVD
PVEYRLRYLKDERAIDLVKSTAERANWTPRTAPMQTASDDHLLRGRGFAYARYIHSKFPG
FGAAWAAWVADVAIDKQTGDVSVTRVVIGHDSGMMINPDGVQHQIHGNVIQSTSRVLKER
VTFEESTVASKEWGGYPILTFPEVPKIDVMMMPRQDQPPMGAGESASVPSAAAIANAIYD
ATGIRFRELPITPERVLAALNAGTLGEPAKSPEKRRKWWFGALFATLGAVLATAWPFHAE
IPPIAPPSAGTWSKATLERGRLLAAVGDCAVCHTAPGGATNAGGLAMQTPFGTLYSSNIT
PDVKTGIGAWSYPAFERAMRDGIGRDGRNLYPAFPYTAFRNINEADMQALYAYLMSQVPV
SQAPTPNAMRFPFNIRPLMAGWNALNLRRGEISPQPERSEQWNRGNYLVNGLGHCAACHS
PRNLMGAEKGGKSFLAGGTVDGWEAPALNGLSKASTPWTEDQLFTYLSTGYSDAHGVAAG
PMGPVVSELSKLPKADIRAMAVYLASLKGDAAAEAPAVTAANVPNPDGRRVFEGACKACH
ADGLGPKLFGVSPSFATNTNVHSDQPDNLIKVILQGISKPATQDLGYMPGFKDSLSNSQV
ADLAAYLRAQFAPNAPQWKGLEQKVAHLRANPGTH