Protein Info for GFF2557 in Methylophilus sp. DMC18

Annotation: Protein YhfA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 transmembrane" amino acids 43 to 60 (18 residues), see Phobius details PF02566: OsmC" amino acids 34 to 131 (98 residues), 62.7 bits, see alignment E=1.9e-21

Best Hits

KEGG orthology group: K07397, putative redox protein (inferred from 86% identity to mmb:Mmol_0437)

Predicted SEED Role

"OsmC/Ohr family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>GFF2557 Protein YhfA (Methylophilus sp. DMC18)
MQVQVKWIDGVSFVGESETGHAVVLDGAPENGGRNIGMRPMEMLLIGMGACTSFDVVTIL
KKARQPIVDCVAQIQAERADTVPKVFTKIHVHFVVTGEGLNASQVERAVKLSAEKYCSAS
IMLQKACEITHGFEIKAPTFE