Protein Info for PS417_01300 in Pseudomonas simiae WCS417

Annotation: thioesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 transmembrane" amino acids 49 to 67 (19 residues), see Phobius details PF09500: YiiD_C" amino acids 6 to 150 (145 residues), 158.2 bits, see alignment E=6.6e-51 TIGR02447: putative thioesterase domain" amino acids 12 to 150 (139 residues), 166.3 bits, see alignment E=1.7e-53

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU0285)

Predicted SEED Role

"Histone acetyltransferase HPA2 and related acetyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TU89 at UniProt or InterPro

Protein Sequence (151 amino acids)

>PS417_01300 thioesterase (Pseudomonas simiae WCS417)
MSRDSRYLESILHHDIPLTRDMGLKVLDWTQGQLELHLPLQANINHKSTMFGGSLYCGAV
LAGWGWLHLQLREEGIEDGHIVIQEGQISYPLPVTRDATVVCPSPEEKVWKRFVATYKRY
GRARLTLETWVVNEGSEARAVVFTGQYVLHR