Protein Info for GFF255 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 transmembrane" amino acids 29 to 52 (24 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 155 to 180 (26 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 306 to 331 (26 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 394 to 419 (26 residues), see Phobius details amino acids 427 to 446 (20 residues), see Phobius details amino acids 493 to 513 (21 residues), see Phobius details amino acids 533 to 556 (24 residues), see Phobius details TIGR03262: putative 2-aminoethylphosphonate ABC transporter, permease protein" amino acids 32 to 569 (538 residues), 752.6 bits, see alignment E=1.3e-230 PF00528: BPD_transp_1" amino acids 113 to 283 (171 residues), 46.9 bits, see alignment E=1.3e-16 amino acids 384 to 558 (175 residues), 31.2 bits, see alignment E=8.8e-12

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 96% identity to pfo:Pfl01_5368)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (574 amino acids)

>GFF255 hypothetical protein (Pseudomonas sp. DMC3)
MNSNLALPLPHKQVRQSSKAEIGDRLFVLGGKILLLVLLGLAVLLPLLAIFWRGFSNDAG
QGGGWLAAKELVTSANFHWLLGNSLKVSLSVAAIVVPLAYLFAYALQRTLIPGKGIWRGI
SLLPLMAPSMLPGIALVYLFGNQGMLRGLLSDNIYGFWGIVLGEVIYTFPHALMILLSAL
SLADARLFDAASSMGASPAKAFRSITWPATRQAVFAAFCLVFTLTITDFGVPVVVGGDYQ
VLALEAYKAVVGQQQFGRGALIGMVLLLPALFSFGVDAWLRRRHGDSMSGRAQVFKPLPS
RLRDGCYLAIVLLICAALLLVFGMAVFSSLVKFWPYNLSLSLNHYQFNETAGGGWLAYGN
SLKMALGTALIGSVLIFTGAYLMEKTRTQRGLNLALRMLSFVPMAVPGLVLGLGYVFFFN
LSGNPLHVLYGTMTLLIVCTIAHYLTTAQMTATTALRQLDAEFEAAALSLKAPLYRHYLR
VTVPICLPALLDIVRYLFVSAMTTVSAAIFLYSPDTILAAVAVLNMDDAGNVGGAAAMST
LILFTSAGVSLLLAWASRGLLRRSQAWRQTAPGH