Protein Info for GFF2542 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Colanic acid biosysnthesis glycosyl transferase WcaI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 15 to 202 (188 residues), 97.8 bits, see alignment E=1.8e-31 PF13439: Glyco_transf_4" amino acids 16 to 205 (190 residues), 45.8 bits, see alignment E=1.5e-15 PF00534: Glycos_transf_1" amino acids 218 to 385 (168 residues), 55 bits, see alignment E=1.5e-18 PF13692: Glyco_trans_1_4" amino acids 229 to 372 (144 residues), 63.1 bits, see alignment E=7.3e-21

Best Hits

KEGG orthology group: K03208, colanic acid biosynthesis glycosyl transferase WcaI (inferred from 61% identity to axy:AXYL_04491)

Predicted SEED Role

"Colanic acid biosysnthesis glycosyl transferase WcaI" in subsystem Colanic acid biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>GFF2542 Colanic acid biosysnthesis glycosyl transferase WcaI (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKILIYGINFAPELTGIGKYTGEMARWLAEAGHDVRAITAPPYYPAWQVGEGHRADRYRR
ETWHGVRVFRTPLWVPQRPGGLKRLLHLGSFALSSLPVLIAQWRWKPDVVWVVEPPLMCA
PAAVAFASLRGAKSWLHIQDYEVDAAFDLGLIQGGTLRRWVERAERWLMRRFDRVSTLSG
RMVERARGKGVEAQRAVHFPNWVDIGGIAPLAAPSPYRAELGLAPDAVVALYAGNMGNKQ
GLDILADVARLVQDDPRIQLVIGGDGSGKADLQARCADLSNVRFLDLQPLERLSDWLGLA
DVHLLPQRADAADLVMPSKLTGMLASGRAVLATARADTELCRVVEHDAACGVVVPPENPT
AMAEALRALAADPARRAALGAQGRRYAEAELSQDTILRRFETQLQALVPGDSALHDSPAP
QQQGVTR