Protein Info for GFF2541 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: GumB protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02563: Poly_export" amino acids 60 to 134 (75 residues), 75.4 bits, see alignment E=5e-25 PF22461: SLBB_2" amino acids 140 to 218 (79 residues), 32.8 bits, see alignment E=9e-12 PF10531: SLBB" amino acids 142 to 194 (53 residues), 35.1 bits, see alignment E=1.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>GFF2541 GumB protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKTTPTQYLGFMGLLALAIALPLHAQTPEAPTGTLAHPVVARSASSAEAMGAPLAAPSTA
GADYQITANDLMEFDVFGVPDMKRDVRVNASGEISLPLIGQVPVAGLTAKAAADRIATRY
KEKYLQDPQVSLFIKEFTTQRVAIEGAVIRPGIYPMTGQLTLLRALALSGGFAPYADINQ
IVVYRQGQAGAREQFTYDLDKVRAGQEKDPNIRSDDVIVVQRNARRTALRDSLFSDILST
LNPFK