Protein Info for GFF2534 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG005080: Possible exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1375 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 1310 to 1329 (20 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 2 to 1361 (1360 residues), 710.2 bits, see alignment E=2.5e-217 PF13116: DUF3971" amino acids 550 to 842 (293 residues), 144.4 bits, see alignment E=5.5e-46 PF13502: AsmA_2" amino acids 1101 to 1352 (252 residues), 233.4 bits, see alignment E=2.8e-73

Best Hits

KEGG orthology group: None (inferred from 50% identity to pna:Pnap_3897)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1375 amino acids)

>GFF2534 FIG005080: Possible exported protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
LWLVFLAWGLFVLTWAALNWWIVPRIGEWRPELERWASSTVGAPVRVGEIRADNTTGGLG
FLPAFMPSFELRDVQLFDPNGRVALHLPLVRTAVSVRSLWHGNFEQVVIDQPVLDVRRTA
QGRIEVAGLDMAGPGERDGRAADWFFSLREFVIQNGTVRWTDELRAQPPLALGALTFVVR
NTARTHQFRLDATPPAEWGEGLSVRGRLREPLIELGGRAPGQSIWHNWDGELYADFRHVD
VARLRAYADLSPWGVDVRTGQGALRAWAAVENGSVAGVTADLALGGVEAQLGPDLPALAV
DELQGRLAAQWSEAGFSVATDDLRFRTREGVDWPGGRLRVQHTAAQAGRGAGTELSAERL
ELGALAALASRLPLPAEARQRLEQLRPAGRVDGFTARWQNAVTAAASDWAPETYQARGRA
SGLSLAGEPSGRMSISGRFPLPGRPGISGATVDFDLNQAGGRAHLSVADGTVELPDVFED
PSVPVDQLEADVSWRVQGQRIEAQLDNLRLSNADAEGTAQVRWQTSDVPAGSNASRFPGV
LDLSATLTRADATRVHRYLPLTVNADARHYVREAVRGGSSNRVEFRVQGPVDHVPFEKPG
ERGEFRISAPLRNVDFDYIPAYLQRAGEAAWPALRGVSGDLVLDRASLKLTALEGGVVNA
SGVRLSKGQVDIEHLGHDAVLRVNAQAQGPANEALGFVQGSPINAMTGQALARARTGAGA
AQVGFALQVPLADPHATKVSGTVRLDGNDLQITPDAPLLGRASGNLAFSETGFSVKAAQA
RVYGGDLRFEGGMQPDAKGVAQVQFRGQGVANAEGLRDAGLGFVSRLFQNASGSAAYTAQ
LGFRAGVPELLVTSELQGLALNLPAPLNKAAEASLPLRYENRVLSVVGESARTDRLAIQL
GSALAPVVSLRYERELGAAEPRVLRGAIAVGLEDDAAAALPPQGVEAHVQLAQLDTDAWE
RAFSSAAGVDVRTAATAGAAVLPRVGPVADANASLAYLPTTLSVRAERVTVRGRHFHRVV
LGGSREGSQWQANIEANELNGYVSVRQAGPGTAGNVYARLKRLQLEPSAASDVEELLEQP
TASVPSLDIAVDEFTVAGRNLGRVEVEAINRGGPLRGSEWRLTRLRVASPEARLNATGNW
VASGSGAGGQRRTALNFRLDIDDSGQLLTRFGREGLVRGGKGRLEGNIGWIGSPLAIDYP
SLSGQIHADIERGQFLKVDPGAGRLLGVLSLQALPRRLVLDFRDVFSEGFAFDFVRGDAR
VEQGVLHTNNLQMKGVNAAVLMEGSADIARERQDLKVVVVPEINAGTASLIATAINPAIG
LGTFLAQFLLRQPLQSATTQEFRITGSWADPQVDKVERASPPAAAAPRDPVPVLQ