Protein Info for GFF2527 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Hypothetical protein COG3496

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 211 to 230 (20 residues), see Phobius details PF07103: DUF1365" amino acids 9 to 245 (237 residues), 259.4 bits, see alignment E=1.7e-81

Best Hits

KEGG orthology group: K09701, hypothetical protein (inferred from 66% identity to pna:Pnap_1450)

Predicted SEED Role

"Hypothetical protein COG3496"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>GFF2527 Hypothetical protein COG3496 (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNAVALLGFGQVRHTRHRPHRHAFAYATCFLMLPMRSLRAHGPGALARNRRAALSFHDAD
HGDGRADSLAWLDEVLRQHGISDAQGEVWLHTYPRVLGHSFKPVSFWYCHRADGSLRAVL
AEVNNTFGERHCYLLDAPRYGQPCEAAKVFHVSPFCPVRGRYRFVFMRTEGPTARTVARI
DYFDGPDDMALLNTSVSGELLPLNARTLRRALWSLSAMGLGVIARIHWQALRLWMRQAPF
FRQPPAPGDFVTAAEPRQP