Protein Info for GFF2500 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: RecA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 TIGR02012: protein RecA" amino acids 13 to 333 (321 residues), 562.7 bits, see alignment E=1.3e-173 PF00154: RecA" amino acids 16 to 278 (263 residues), 476.7 bits, see alignment E=3.8e-147 PF08423: Rad51" amino acids 46 to 237 (192 residues), 35.6 bits, see alignment E=1.3e-12 PF06745: ATPase" amino acids 49 to 215 (167 residues), 36 bits, see alignment E=9.7e-13 PF21096: RecA_C" amino acids 281 to 336 (56 residues), 87.9 bits, see alignment 7.4e-29

Best Hits

Swiss-Prot: 88% identical to RECA_DELAS: Protein RecA (recA) from Delftia acidovorans (strain DSM 14801 / SPH-1)

KEGG orthology group: K03553, recombination protein RecA (inferred from 85% identity to vpe:Varpa_5921)

MetaCyc: 70% identical to DNA recombination/repair protein RecA (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"RecA protein" in subsystem DNA-replication or DNA repair, bacterial or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>GFF2500 RecA protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MDAAVKNNPVNSEKAKALQAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIAL
GVGGLPKGRVVEIYGPESSGKTTLTLQVIAEMQKLGGQCAFVDAEHALDIQYAQKLGVNL
QDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLM
SQALRKLTAHIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDLGVVHRVIEKSGAWY
AYNGEKIGQGRDNAREFLRENIELRVEIENKVRTELGVPLLPVDEAPAPAAKAGKAEKAA
KAKDTDAASAA