Protein Info for GFF2468 in Variovorax sp. SCN45

Annotation: Outer membrane protein assembly factor YaeT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 28 to 800 (773 residues), 821.9 bits, see alignment E=2.7e-251 PF07244: POTRA" amino acids 29 to 95 (67 residues), 23.4 bits, see alignment E=8.2e-09 amino acids 97 to 176 (80 residues), 51.1 bits, see alignment E=1.9e-17 amino acids 180 to 267 (88 residues), 53.3 bits, see alignment E=3.9e-18 amino acids 272 to 344 (73 residues), 38.8 bits, see alignment E=1.3e-13 amino acids 352 to 425 (74 residues), 58 bits, see alignment E=1.3e-19 PF01103: Omp85" amino acids 452 to 800 (349 residues), 233.7 bits, see alignment E=4e-73

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 87% identity to vpe:Varpa_4868)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (800 amino acids)

>GFF2468 Outer membrane protein assembly factor YaeT (Variovorax sp. SCN45)
MHLPKSLAAAAVLLASLAALPAWATDPFTVKDIRLEGLQRVEPGTVFATMGLRTGDTYSD
ERGANAIRELFKLGLFKDVRIDVNGNVLVVVVEERPAVADVDFVGAKEFDKAALQKALRE
IGLAEGQAFDKALADRAEQELKRQYISRSLYNAQVITTVTPLENNRVNLTFTVTEGEPAR
IREVHVVGNKAFSESTLLDLFDQDTGGWLAWYTKSNQYSRTKFSGDMETLRSFYITRGYL
EFRIDSTQVAISPDRQTIVLTINITEGEKFAVAGVKLAGDYMGRDDEFKTLVTIRPGQPY
NGEAVAATTKAFTDYFGTFGYAFARVTAEPEIDRANNRVTLVLKAEASRRAYVRRINIGG
NAKTRDEVIRREFRQYEGAWYDGNKIKASRDRIDRLGFFTDVSVDTIDVPGSPDQVDLAV
NVTEKPTGSLQLGAGYSSTDKVSLSFGITQENVFGSGNYLGLNVNTSSYNRTISLTATDP
YFTKDGISRTLNVFHTTTRPYYEADGNYKLASDGGSVRFGFPVGEQDTVFLGIGVERYSF
TPGTNGTYALVDGSYVYTATPQAYLDYFKCTGTAPSVTCAKSSVVGIPATLGWSRDDRDS
ALVPTRGKLQSANLEVGVGSELRYLKTNYQYQQYFPLSKQYTLAINGQLGYARALGDSTY
PIFKNFYAGGLGSIRGFEQNSLGPKDSVTDGALGGTRKAIFNMEFSTPFPGAGNDRTLRL
YTFLDAGNVFADRTASMTDAQWKAQNRLRASAGIGISWISPLGPLRLAYAVPLLYQKEDT
ANNIAADRTQRFQFQIGTSF