Protein Info for GFF2468 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Guanine-specific ribonuclease N1 and T1 precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 PF00545: Ribonuclease" amino acids 28 to 111 (84 residues), 106 bits, see alignment E=6.4e-35

Best Hits

KEGG orthology group: None (inferred from 73% identity to pol:Bpro_4859)

Predicted SEED Role

"Guanine-specific ribonuclease N1 and T1 precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (115 amino acids)

>GFF2468 Guanine-specific ribonuclease N1 and T1 precursor (Hydrogenophaga sp. GW460-11-11-14-LB1)
LGTIAVQARAPNAPFTDPGTASVAVAGLPPQGQDVMNQIRQGGPFRYDKDGSVFGNRERL
LPGEKRGYYREYTVPTPGLNHRGARRIVCGGLKPRAPEACYYTEDHYSSFRLIVQ