Protein Info for PS417_12510 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1705 transmembrane" amino acids 840 to 859 (20 residues), see Phobius details amino acids 1075 to 1095 (21 residues), see Phobius details PF20178: ToxA_N" amino acids 940 to 1114 (175 residues), 53.3 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: None (inferred from 71% identity to pfs:PFLU2703)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U1A3 at UniProt or InterPro

Protein Sequence (1705 amino acids)

>PS417_12510 hypothetical protein (Pseudomonas simiae WCS417)
MSQVQPPYFFPEVLRSVWKERDRERHFGIDANDRGFLRNLPLSSHEVRGKQVPPMIAQTL
WLNKNSPTEQELVGSFMMSSTGTYTRAFLYTPYGGLEKFDSRTLLLSELTERLKTPAKAD
ELLQFIALGTRSGLKLSSPLVLTPVDIEGDVFDQQRKAVEQQQTLNLQAVLAELVKLPSL
DMMLQSLLRSVFHPLFPGLEPSQTRINLFKLLSTEGKPRQWVNSLSISEALLMLYRQQAW
PAGQTREYSHPYAITAANNATRWEDGLKQASEQLSSFLQNTLETFWNTESPNGTSRREFL
AHTMAHKARIDLLFKRQSEIITPEHADKLAALYLPDGAPRSHASDGLRVETVRFWERASH
FVELTNSVMISDVQTWFYSPPKGLQVLADHDDLIHTLKAMVKAPAYEDDVYNALSLEERL
WFIGFNQPSVSGNLIVGNVFEHLMEGIIDKQKQNLIYVLGQFRRERGDINLSALLDHAMD
VRFMIDDKLLTLDTAHRWTTHSVLADPLRPISVAAKRAEQAHKQLIDIPDALENLVKPLP
SITAPLAEALSSRERQAVDPERVYINRYTDDAPPYPLVLPLDSHSLADHFAARLAEGAGP
VPETRHYGVYKPDHTAYGQQLTHVDVRSLNRIVNQVLAHYKEQGIHDAPRKHLQDLLPQM
GVMMSNAIRHQAYLRRLNKTLDARDEAIIQAVFDPFNPDRRRREDLEGFIPDAYRITVQR
DEEALRHSLANCLMITERGGLDHQHSGRAILWTPAWGLESFVSPSVAKQQLEERLSDPCA
CLALLENLDPRQRQPHANYTLGAFWLITEPISENRQQSWIDHYIAQRAHWLAQKPNGKAL
LNLMAVLPTPVLGGAAQLAHHFMAQRSLPAWLGMASPAEQQHHAELLEQYRLNTLDQKDY
LYECSSLRQRVHDTLNEMLVDYSVDPEDVFITPRLAMGGQRQNLTDYALAHINEQASAFT
VESAVTQLTESTIRPFLLKLNIAQATQDYLKEKLASGQPGALERELRFIRQLPWQLLQQA
HALKLQERLSEAGYNLIRQVFDMPDAVARATISGATASIRPLEMIATPGARIVKALGLYV
MGAGATGPLILYAPYYPGQCFMEFEHQAQFLLHLNAPGMLQDWIIAHLEGADKTTYKNLL
ISTAGATSDITLANHPIRGHAIKQLYQDNQVVMGRMLKHQQDPDGAGLWGTVKSLLSGGV
RIVAQFLPGTLQIPVVIWQSYKLFKDSAEALQQHHWQDALRSFILGVATMARLERLMRTP
APKAAPPVYKEVNERDLSPSDTVVAPTVKDIDVTDPRRTRLQTYETSQVALIDLKKQAET
GLYAAADGRSLYGAVEGKVYPIKNSPQLRIAGLSTNSDGPLLSRTPRQQQVLAPHYHPLQ
YGQAITRLGNHYVTRLNASLDMNIEATGMDEIRRIYPIKAQQIIEALDIARLYALRAMHN
LVQLRRLTPGTRLDDFLKRLFDVKNVDAGLLKKVHDAITPLCKALVDPDLDGWDTSRFVV
GANRNPSQRVIAFTVSGDRKNQVFFTELFFDQQLRHKYITLLTEPFNIDGHARAATLIHE
FAHLYARAEDITYIEARRPFADLIDTTNQRGRFEHTLLQAFQHNVLSLRTPFNQLFSRWY
PRSGSSGTSGNSGNWVTMDASNSEDLAAKAILETTASTSIDEARRAFLDTASADKRIDTI
LRNADSVARLICEMGRALDPEQGTR