Protein Info for GFF2423 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 PF00535: Glycos_transf_2" amino acids 8 to 177 (170 residues), 62.9 bits, see alignment E=3.8e-21 amino acids 581 to 704 (124 residues), 58.3 bits, see alignment E=9.3e-20 PF13641: Glyco_tranf_2_3" amino acids 580 to 804 (225 residues), 28.8 bits, see alignment E=1.2e-10

Best Hits

KEGG orthology group: None (inferred from 75% identity to pfo:Pfl01_1508)

Predicted SEED Role

"O-antigen biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1197 amino acids)

>GFF2423 hypothetical protein (Pseudomonas sp. DMC3)
VNSLPLVSIAIPAFNPRFFERALNSAVSQTYAPLEIIVCDDSRGREIEGIVSAVAERSGV
AVRYVRNPRTLGLVGNLKACLDQAQGEFVKFMCDDDHLYAACIEQQAHEMLREEVSLVLA
QRLFWDADDIILPARLENTSLSPASGLFKGDDLLGIFEKFPVNVLGGFSSALFRRSDLVD
LLPALTQDGHCFVATLDFALYVCLLRRGNLAMSNTVLSAERLHPERLSAQQPMKDAVEVE
REWILQMLKARSGESAPAPGWVRYVPLTKADAMPRVWEELPLSRTLGTKQSRQEWCVGID
SWSFAELYAHWLQCRSLTEGQRKLLPETLAAWPQQPRIVPIVIDAQGSRDGVERTLEALA
RQDYAPELILVLSASCNEATLDGRVFHMPLEGDGLGQINALLPQLEGADWFYLLQAGDRL
MVPALLVMADRIAHSPSLGCVYSDEGGLRDGESVEPAFKPDFNLDLMRSYPYVGRALAFK
RERFLALGGFDTTFTELAPHDMLWRMVESDGTQVIGHVAEVLLESPFDLSRWLAEPGVIE
QNPRVLEAHLQRIGVAHEIRRGSCQLLNRVDYRHARRPLVSIIIVTRDQTAALQRCVETV
LEKTAYADYELLLVDNGSETAEARAWLDGIAQLGGDRIRVLTYPQPDNMAALHNFAVTKA
RGEYVLLLNTFAVITHADWLDELLNHAQRPEVGVVGAKLFNPDGYVLHAGMILGMQGAVG
LPFYGQSLQSDGYMFRLQATHDLSAVGGDCLMVRKTVFEAVAGLDEEDLKQALNVVDLCL
RIGQEGYLVVWTPYALLAQGVRPTVESTTEQGQQHLHEQEIFYKRWLPRIARDPAFNVNL
SLQGVGATSFSLEPGLRTGWTAFSRPQLPNVLAVPINASAIGHYRMSQPLIELEAANRAE
GCIRYGLPSIIEIERQSPDVIVLQGRYSQGAIDEIPPLKKFCHARRIFELDDYVIDVPHR
NAHIRNMPSKQEMERMVRQAISLCDRVVVSTQPLANALSDMHHDIRVVPNMLAQNLWTGL
RGQRRTSKKPRVGWGGGTSHHGDLAVIADVVRELANEVDWVFFGMCPDDLRPYMHEFHGV
IPLDVYPAKLASLNLDLALAPLEFHIFNDCKSNLRLLEYGACGYPVICTDTEAYQGYLPC
TRVKTNSTDEWLQAIRMHLADPDASYRMGDELHEVVMRDYVLRGDNLRYWENGWLAD