Protein Info for GFF2390 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Alkanesulfonates transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 225 to 243 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 249 (169 residues), 78.2 bits, see alignment E=3.5e-26

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 33% identity to scl:sce4769)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>GFF2390 Alkanesulfonates transport system permease protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKPQTLKPVNDLLHVTVGFQLLVLILWEMGARSGRFPDYLVGPVAIVVEAGHHLARGEVI
GQMGHSLFRVYAGFLIGSAFGVVLGLLSGVSRPVRDLLDTLQAFVHAIPKISLFPAVAVW
LGFSDASRILIIALSCFFPAYLNAMSGALGINPKYLWLSRNNEMGRLRTFTEVIVPASLP
RTLVGLRISLMVAFILMVATEVVGHSDGLGSLVMLAYQNGEYPQMYAYILFIAVAGYLSN
LVLQRVAQRLCRGQSMELGGKA