Protein Info for GFF2383 in Pseudomonas sp. DMC3

Annotation: Outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01734: Patatin" amino acids 29 to 221 (193 residues), 127.8 bits, see alignment E=6.2e-41 PF01103: Omp85" amino acids 458 to 729 (272 residues), 54.8 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 91% identity to pfo:Pfl01_1471)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>GFF2383 Outer membrane protein assembly factor BamA (Pseudomonas sp. DMC3)
MRRLLFCLLLGFLPLLVLASEAPRPKVGLVLSGGAARGLAHIGVLKALEEQGIRIDAIAG
TSMGAVVGGLYASGYKIDELEKLALSIDWQAALSDAPPREDVPFRRKQDDRDFLVKQKLS
FRDDGSLGLPLGVIQGQNLALLLESLLAHTSDTRDFDKLPIPFRAVTTDIANGEKVVFRK
GHLPQVIRASMSIPAVFAPVELDGRLLVDGGMTDNIPLDVAREMGVDIAIVVDIGTPLRN
RKQLTTVVDVLNQSITLMTRRNSEEQLATLHANDVLIQPALAAFGVTDFGKAQEMIDAGY
RATRILDARLAQLKPTETQDAELNAARQPGQRTPIITAIRVENDSKVDDDVIRYYIRQPI
GAPLDLGRLHSDMGTLYGLDYFDQVRYRVVHKRQDHTLVISASGKRSGTDYLRVGLNLSD
DMRGDSAFNLGASYRVNGINRLGAEWLTRAQIGDKQELYSEFYQPLDVGSRYFVAPYGSF
EAQNVDSVLDNDPIAQYRVERYGFGLNLGRQIGNNGEVRLGVGQAWGKADVRIGDQDLPS
ESFNEGFYTVKYSYDSLDNVYFPHEGKDVSLTFAQFEPGLGSDNRYRQWELNFDKAMSHG
PDTLILGGRYGRTLDDANVVTSSFLLGGARQLSGFREDALSGQNVSLMRAVYYRRLTPRS
YLPLDFPLYAGASLERGRAWNNDNEFDSGYINAASVFIGFDTPLGPLNFTYGLNDADEQA
VYLNLGQTF