Protein Info for GFF2377 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2615 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF17803: Cadherin_4" amino acids 316 to 388 (73 residues), 34.1 bits, see alignment (E = 6.5e-12) amino acids 561 to 633 (73 residues), 34.6 bits, see alignment (E = 4.4e-12) amino acids 806 to 878 (73 residues), 35.9 bits, see alignment (E = 1.8e-12) amino acids 1054 to 1138 (85 residues), 30.8 bits, see alignment (E = 7.1e-11) amino acids 1296 to 1368 (73 residues), 34.6 bits, see alignment (E = 4.5e-12) amino acids 1544 to 1625 (82 residues), 35 bits, see alignment (E = 3.3e-12) PF17963: Big_9" amino acids 327 to 427 (101 residues), 30.9 bits, see alignment (E = 8.3e-11) amino acids 572 to 672 (101 residues), 34.7 bits, see alignment (E = 5.5e-12) amino acids 817 to 917 (101 residues), 34.9 bits, see alignment (E = 4.9e-12) amino acids 1061 to 1172 (112 residues), 37 bits, see alignment (E = 1.1e-12) amino acids 1306 to 1407 (102 residues), 39.8 bits, see alignment (E = 1.4e-13) amino acids 1551 to 1660 (110 residues), 36.5 bits, see alignment (E = 1.5e-12) TIGR01965: VCBS repeat" amino acids 359 to 444 (86 residues), 35.8 bits, see alignment (E = 1.1e-12) amino acids 604 to 689 (86 residues), 34 bits, see alignment (E = 4e-12) amino acids 849 to 931 (83 residues), 33.4 bits, see alignment (E = 5.9e-12) amino acids 1240 to 1323 (84 residues), 26.7 bits, see alignment (E = 7.2e-10) amino acids 1347 to 1417 (71 residues), 32.1 bits, see alignment (E = 1.6e-11) amino acids 1729 to 1797 (69 residues), 25 bits, see alignment (E = 2.5e-09) PF13519: VWA_2" amino acids 1813 to 1924 (112 residues), 43 bits, see alignment (E = 1.3e-14) PF00353: HemolysinCabind" amino acids 2348 to 2381 (34 residues), 36.5 bits, see alignment (E = 7.6e-13) amino acids 2376 to 2409 (34 residues), 26.7 bits, see alignment (E = 8.7e-10) amino acids 2440 to 2472 (33 residues), 20.6 bits, see alignment (E = 7.2e-08) amino acids 2465 to 2498 (34 residues), 30.1 bits, see alignment (E = 7.7e-11) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 2509 to 2611 (103 residues), 63.8 bits, see alignment (E = 4e-21)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2615 amino acids)

>GFF2377 hypothetical protein (Pseudomonas sp. DMC3)
MAALIGTVTKVIGQVFAQASDGIKRPLFEGDRLYAGDQLITGAEGAVAVKLQNGEELTLG
RGSSITMTGQLLADQAVPVNVDEAQTPSQAQLTDVEQIQQAIAAGEDPSKTAEATAAGPN
APTGNTGELGGGHSFVLLTEVGGRVDPIIGFPTAGFNGIPEFPEYRRDADIDNGDDTPAP
VVVPPPPVNNPVILNGLNGADGELNLNEANLPDGTAANPGALTQSGSFTVSAADGLNSLS
IGGINVIVGGVPIGFPQSITTQLGNTLTITGYNAATGTVSYSYTLNGNETHAAGDGVNNL
SEQFTVIATDSNGDSATGTLDVNITDDVPKAFDDANGVASETLLTLTGNVLTNDIQGADR
VPTGPVTPGTFTGTYGTLVLNADGTYTYTLNTSDADFKALTGGGNGTETFAYTITDADGD
SSSANLVLQIHNNDDPVTIDGLNVAGGELTIYEKNLSDGSAPDAGALTQNGTFTITALDG
VTTLTVGGIAVVTSGVAAGFPQSITTPLGSTLTITGFNAATGVVSYSYTLADNEAHPNAN
GANNLPEQFAVTVVDDNGTTATGTLDVNIVDDLPNANDDSNGTASESQLTLTGNVLTNDV
QGADRVATGPVTPGTFTGTFGTLVLNADGTYTYTLNTSDADFKALTGGGNGTETFAYTIT
DADGDTSTANLVLQIHNNDDPVTIDGLNVAGGELTVYEKNLSDGSAPDTGALTQNGTFTI
TALDGVTTLTVGGIAVVTNGVAAGFPQSITTPLGSTLTITGFNAATGVVSYSYTLADNEA
HPNANGANNLPEQFAVTVVDDNGTTATGTLDVNVVDDLPKANDDSNGTASESQLTLTGNV
LTNDVQGADRVPTGPVTPGTFTGTFGTLVLNADGTYTYTLNTSDADFKALTGGGNGTETF
AYTITDADGDTSTANLVLNIHNNDDPVLLNGLDVNGGELTVYEKNLSDGTSPNTPALTQN
GTFTVSALDGLQTLTVGGIAVITNGVAAGFPQSVITPLGSTLTITGYDPATGVVSYSYTL
ADNEAHPTANGANSLTENFDVVATDTDGSTASGQINVNIVDDLPTAHADAASVAEGGTVS
GNVLNNDVGGADGPAITGAVVGVRAGADTSTSAIGGLNSQINGTYGYLTLDANGNAVYHS
NPNAVNGPGAVDVFTYTVRDADGDESTTTITIDVYNSCLKAVSDTDVTVYEKALDLNQDG
QDLAAGSVVGSDPNSTGETASGTLVGSVTGAVGAISYALVSSATGNYGQIVLNANGTYTY
TLTSPATTTPHADDGANSLSETFTYQATDSLGNVVTSTIVVNIVDDVPKARNDSNATNAT
EDQLTLTGNVLDNDVQGADRVAVGPVTAGTFTGTYGTLVLNANGTYTYTLDANDADFKNL
HGGGNGTETFAYTITDADGDTSTANLVLNVHNNDDPVCLDGLDVKGGELTVYEKNLSDGS
NPNTAALTQSGSFTVTALDGLQTLTVGGIAVISNGVAAGLPQSVVSPLGSTFTITGYDPA
TGMVSYSYTLVDNEAHPNANGTNSLSESFDVVATDTDGSTASGQINVTIVDDLPTANADT
GSVAEGGTVNVSVLGNDSSGADGAATVVGVRAGSNTATSASGGLNSNINGNYGYLTLDAA
GNAVYHSNPNSVSPPGATDTFTYTIRDSDGDESTTTLTINVADSKLVASVDQDVTVYEKA
LDLSKDGQDLAPGTVTGSEPGNTGETASGTLVGSVSGGSGAITYTLVGNATGSYGQLQLN
ADGTYTYTLTSAPKTAPNANDGPNTLSETFTYKATDALGNSTTSTLVVNIVDDVPKAVAS
DRSVTAVEIDSNILIVLDISGSMADPSGVPGLSRLALAKQAIGALLDKYDDLGDVKVQLV
TFSSNAADRTTVWVDVATAKTLLAGLNAGGGTNYDAAVAVMQTAFDTSGKLTGAQNVGYF
FSDGKPNEGDIGTADEAALKNFLDANNIKNYAIGLGSGVSNANLDPLAYDGINHTNTNAV
VVTDLNQLNSVLSGTVQGAPVTGSLLGEGGSFGADGGFIKSIVVDGTTYTYDPKALSGQG
SLTASGGANHGTFNTANNSVSIATNNSGTLVVNLDTGEYSYTSQKTTAVVITENIGFTVS
DKDGDLASSTLTVKVIPNAPPVAMDDHVITNVLSGNIVVPGELLLANDSDPNGDTLNATP
TSFNTGWVSKAADFTGTGLIGFTGQNNNAANQNLANVRSAFSANAATMTAALVVSGYLGM
VSNSNANDEDRITVNLRQGETLNLDHNLGAGKISMEYSLNGGAWMALADGQTLSASADGV
YQIHITNIGNGGGNPNAAENYQLTMTLNYAGAHDITPDYHGTYTANDNHGGSDTANVSIS
YQDGHTLTGTAGDDVLVAGSGNNVINAGEGNDVLSAGSGNNEMHGDGGNDLLYSGAGNDL
LDGGTGSDTASYAHATAAVTVNLGLLGAQNTLGAGTDTLTGIENLIGSNFNDSLTGDGNN
NVINGGLGNDFLNGGAGDDLLIGGMGNNTLTGGAGADTFQWLKGNSGHDLITDFTPGTDK
LDLSQLLQGENASTASLDDYLHFTVSGSGASVMTSIDVSAMAGGTPNQTIDLAGVNLASH
YGVTPGAGGMVAGGHDTATIISGMLNDHSLKVDTV