Protein Info for GFF2364 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details amino acids 219 to 242 (24 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details PF00892: EamA" amino acids 13 to 142 (130 residues), 60.4 bits, see alignment E=1.1e-20 amino acids 158 to 294 (137 residues), 71.3 bits, see alignment E=5.3e-24

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_1448)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>GFF2364 hypothetical protein (Pseudomonas sp. DMC3)
VSAERRNADGFALQVMIGLCLIWGVQQVLIKWAATDIAPVMQAAGRSGISALLVGLLICW
KGGWDQVGSTWRGGLLAGALFGLEFLFIAEGLQLTTAAHMSVFLYTAPIFTALGVHFLLA
SERLRPLQWLGILLAFIGIAIAFAGGVSWDNLDRRMLLGDAFGVLAGACWGATTVVVRAS
RLSEAPVTLTLFYQLLVGFIGLLLIALFSGQITHVSLTTVAVASVLFQGLVVSFFSYLVW
FWLLRRYLAANLAVFSFMTPLFGVTFGVLLLGEQLSLNFVIGAVLVLLGITFVSAEQWLR
RRLRKALGQ