Protein Info for GFF235 in Pseudomonas sp. DMC3

Annotation: putative GMC-type oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 531 PF00732: GMC_oxred_N" amino acids 79 to 297 (219 residues), 195.7 bits, see alignment E=1.4e-61 PF05199: GMC_oxred_C" amino acids 382 to 516 (135 residues), 76.7 bits, see alignment E=4e-25

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_5347)

Predicted SEED Role

"FIG022869: Oxidoreductase, GMC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (531 amino acids)

>GFF235 putative GMC-type oxidoreductase (Pseudomonas sp. DMC3)
MPVPDPFREGLARGWKTYNGAQLSDDLTLEADVAIIGSGAGGGTTAEILSAAGYKVLLIE
EGPLKTSSDFKLLEDEAYSSLYQEGIGRMSKDGAITILQGRAVGGTTLINWTSSFRTPEP
TLEHWASEHNVKGHSPAEMVPWFEKMEQRLGVAPWMVPPNANNDVIRKGCEQLGYSWHVI
PRNVRGCWNLGYCGMGCPSNAKQSMMVTTIPATLEKDGELLYLARVEKLLISGDKVTGLH
CVAMDQRCVEPTGRSISVKARHYVLAGGGINSPALLLRSDAPDPHERVGKRTFLHPVNMS
AARFAEVVNPFYGAPQSIYSDHFQWKDGTTGPMAFKLEVPPLHPALAATLLGGFGKENAQ
HMADLPHTHAMLALLRDGFHPDSSGGSVELRGDGSPVLDYQVSQYAWDGLRRAFHVMAEI
QFAGGAQSVMPMHADGRYVKTLAEARSMIDGLSLELYRTRLGSAHVMGGCAMGEDPQSAV
ADSLGRHHQLRNLSIHDGSLFPTSIGANPQLSVYGLTAQLATALADRLKNP