Protein Info for GFF2336 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Recombinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF00239: Resolvase" amino acids 18 to 159 (142 residues), 83 bits, see alignment E=2.3e-27 PF07508: Recombinase" amino acids 214 to 317 (104 residues), 71.7 bits, see alignment E=5.3e-24

Best Hits

KEGG orthology group: None (inferred from 71% identity to bgf:BC1003_0033)

Predicted SEED Role

"Recombinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (520 amino acids)

>GFF2336 Recombinase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MQTGELRSLQEGQTTVRAAEYVRMSTEHQQYSTQNQVARIREYAKHRGIEVVRTYADEGK
SGLRITGRLALQKLINDVESRATDFSMVLVYDVSRWGRFQDADESAYYEYICKRAGIQVV
YCAEQFENDGSPVSTIVKGVKRAMAGEYSRELSAKVFAGQCRLIEMGFRQGGQAGYGLRR
LLVDQTGVAKGQLGRGDHKSLQTDRVVLVPGPDSEVHLVKTIYRWFVDDGLSEADIAIRL
NDACERNAQGREWSRATVHEVLINEKYIGSNVYNRVSFKLRKLRVVNPPEMWIRKESAFS
PIVDKELFYTAQGIIRARSRRFTDEELIERLRNLYRQKKSLSGLIINSTEGMPSTSVYAY
RFGSLIRAYQLVGFTPARDFQYVEINRLLRRMHPTIIEAIEAEMTALGGVIQHEPASDLL
VVNDEFSVSLVLARCQQRESGGLFWKVRFDSSLSPDLTVAARLAPGNETVLDYYLLPRID
LSFPQIHLGERNPVELESFRFDSLGYLHGMAARTRLRRAA