Protein Info for GFF2335 in Variovorax sp. SCN45

Annotation: Lactoylglutathione lyase and related lyases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF00903: Glyoxalase" amino acids 5 to 129 (125 residues), 73.1 bits, see alignment E=1.4e-24

Best Hits

KEGG orthology group: None (inferred from 79% identity to bge:BC1002_6226)

Predicted SEED Role

"Lactoylglutathione lyase and related lyases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>GFF2335 Lactoylglutathione lyase and related lyases (Variovorax sp. SCN45)
MSQGIGVVGVYVNDQDEALAFYVEKLGFRVQADVGNGAYRWLTVQHPEQPSFELGLFTPG
PPVHDEATAQTLRAMVAKGAMPALVLNVTDCRAAYERMRKLGVEFTQEPMERYGSVDAGF
RDPSGNGWKMIQARAKAA