Protein Info for GFF2316 in Variovorax sp. SCN45

Annotation: FIG015547: peptidase, M16 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00675: Peptidase_M16" amino acids 50 to 187 (138 residues), 83 bits, see alignment E=2.2e-27 PF05193: Peptidase_M16_C" amino acids 197 to 380 (184 residues), 101.7 bits, see alignment E=4.6e-33

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_5026)

Predicted SEED Role

"FIG015547: peptidase, M16 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>GFF2316 FIG015547: peptidase, M16 family (Variovorax sp. SCN45)
MALVAPWAVPAQAQSTPAPAASSAATAAAPGPQQFTLPNGMTLIVQPDRRSPTAVQMVWV
RVGSLDEVDGTSGVAHALEHMMFKGTKDIKPGEFSRRVAALGGQENAFTTRDYTGYYQQI
PVGSLEQVMKLESDRFANNQWPDDEFKREIEVVKEERRLRTEDQPRALLGEQQNAAVFIA
SPYHRPVVGWMSDLDAMTPADVRDFHQRWYVPANAVLVVAGDVDVAQVRAMAEKYYGRIP
ARAVPVRKPRVEPVQRGIRRLEFKAPAEQAYVSLAYRVPQIASIDDVNSDAWALVVLSAV
LDGYAGARLDRALTQGPDRVADSAGAYAGFVGRGPQLFVLEGVPAAGKSAEAVEAALRAQ
VARIAKDGVGEAELARVKTQWVASETYKRDSVMAQARELGSNWIQGLPLDASERIVARLQ
SVTAAQVQAVAAKYFGDDQLTVATLRPLPPEAKRGRGFAAPAGELR