Protein Info for GFF2310 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 transmembrane" amino acids 52 to 74 (23 residues), see Phobius details PF00768: Peptidase_S11" amino acids 77 to 297 (221 residues), 190.8 bits, see alignment E=2.9e-60 PF13354: Beta-lactamase2" amino acids 86 to 228 (143 residues), 42.6 bits, see alignment E=4.6e-15

Best Hits

KEGG orthology group: K01286, D-alanyl-D-alanine carboxypeptidase [EC: 3.4.16.4] (inferred from 74% identity to xau:Xaut_1925)

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.16.4

Use Curated BLAST to search for 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (500 amino acids)

>GFF2310 hypothetical protein (Xanthobacter sp. DMC5)
LWQTKPAHDLCRIGRWLASAFSAQAKPVMEGQFLRAISQQGADRLAPTTSRFALRASFAG
CLLAAFGLVLAAGIPARANPILLVEADTGRVIEQKEAGRPWHPASVTKLMTVYVALNAVR
NGRLKFDTPITVSPAAAAQQPSKMGFKVGTVVTLDNALKMVLVKSANDMAWLVGEGVAGS
MPAFVAEMNATAAHLGMTGTHFENPNGLPDPAQVTTARDLAILARAIIYHFPEQEALFRI
PAIKIGKVVLRNYNRLIDRYPGADGMKTGFVCGSGYNLVATATRGNKRLIAVILGARSGT
ARTEQAALMFEKGFQSSWSVFGAAAPLLSAIPNSGGPIYDMRAEVCGGKRAVTASEADDE
PDPQASSSFSFATPALPKSGAELLQTLPPSMPPVPVYVGTRNAVEDYATAYEPDPPKKPK
AAAGSKPDSKSASTADKPKTGGEKASGDAAKKPASTADKKQAQPQGAVAAGSSATPKPKP
KPAPAPANPEAAAPAPKPAT