Protein Info for GFF23 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: ABC transporter permease protein with unknown substrate

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 68 to 91 (24 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 225 to 243 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 250 (170 residues), 79.6 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 33% identity to cyj:Cyan7822_1414)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>GFF23 ABC transporter permease protein with unknown substrate (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKPQTPKPVNDLLHVTVGFQLLVLLLWEMSARSGRFPDYLVGPVAIVAEAGQYLAQGEVI
RHMGHSLFRVYAGFLMGSALGVVLGLLSGVSRPVRDLLDTLQAFVHAVPKISLFPAVAVW
LGFSDASRILIIALSCFFPAYLNAMSGALGINPKYLWLSRNNEMSRLRTFTEVIVPASLP
RTLVGLRISLMVAFILMVATEVVGHSDGLGSLVMLAYQNGEYPQMYAYILFIAIAGYLSN
LVLQRVAQRLCRGQAMELGGKA