Protein Info for GFF2293 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Dienelactone hydrolase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 PF01738: DLH" amino acids 17 to 235 (219 residues), 188.5 bits, see alignment E=3.2e-59 PF02230: Abhydrolase_2" amino acids 88 to 207 (120 residues), 27.4 bits, see alignment E=7.5e-10 PF00326: Peptidase_S9" amino acids 162 to 217 (56 residues), 23.9 bits, see alignment E=7e-09

Best Hits

Predicted SEED Role

"Dienelactone hydrolase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (241 amino acids)

>GFF2293 Dienelactone hydrolase family (Hydrogenophaga sp. GW460-11-11-14-LB1)
LQDRNPWITVPTAAGPMQTFVARPAAPATRAVIVLQEAFGVNAHIQDIAQRFAAQGFLAL
APDMFHRSGTRELAYAQHSEAVALISQIGVAPILEDVQAVLAHLQSAEQIGAGRTAVVGF
CFGGRAAFTAATRLPGLGAGVVFYGPGIAAGPHATLGDAGAIRAPLLLHVGAEDPTIPAA
QVQAIDAALQAAGVRFAQHVYPGAGHAFLCDARPAMYREGAAAQAWQRTLDFLNAELPHG
Q