Protein Info for GFF2289 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 229 to 246 (18 residues), see Phobius details amino acids 256 to 281 (26 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 320 to 340 (21 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 8 to 159 (152 residues), 111 bits, see alignment E=2.5e-36 PF05145: AbrB" amino acids 30 to 337 (308 residues), 243.3 bits, see alignment E=1.5e-76

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 82% identity to xau:Xaut_0301)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>GFF2289 hypothetical protein (Xanthobacter sp. DMC5)
MRSAASAAVTLGAGALGGLVFALLGLPAAWISGSLVACIGLALAGMRIDVPEWLRFLAFV
VLGTSMGTMLTPETFARAATWPVSMACLGASVLGTMAGGTLFLTRVAGWSRESAFWASAP
GAFGTVVAMAADTNADLRQVAFAQTLRLFLLVAALPNVLAALGMTAGGVPPPPHVSTLGE
IVVLFGVCTGAALLAARLKLPGGLILGALAGSAVLHATRLSTAVLPAELLIPAFVVLGGS
VGVRFIGTSLSTIRAYVLASLGAFLVAVAISTLFALLAAWLTGDDLGKLVTAFAPGALEA
MTALGFAMGYDPAFMSAHHLFRFAGLSVALPVAARLMFAAAEQAGRDHTQ