Protein Info for GFF2280 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 21 to 49 (29 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details PF03631: Virul_fac_BrkB" amino acids 18 to 272 (255 residues), 152.2 bits, see alignment E=1.1e-48

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 89% identity to xau:Xaut_0308)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>GFF2280 hypothetical protein (Xanthobacter sp. DMC5)
MLRRIYHIVLDAFWTFSADDGWAIASHIALSALMSLFPFLIFVTALAGFLDLRPLAQETI
QLILETWPEQVAGPISREIYNVVNQVRTDVLTYGVVLALYFSSNGVESLRIGLNRAYGMK
EMRSWYWLRLESIGYVLIASVAMLALSFLVVLGPLLWQTAVAQVPALKRFSGTITVLRFG
ATSIILVVSLLVAHLWLPAGRRKLAEVAPGILVTLVMWLVAATAFGFYLAEFPANYVTTY
AGLASVMIALVFLYLTASIFVFGGELNAAIKRAFAPEPSHDEAEAMKAVS