Protein Info for PS417_11590 in Pseudomonas simiae WCS417

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1127 transmembrane" amino acids 46 to 70 (25 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 113 to 140 (28 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 260 to 289 (30 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details amino acids 573 to 595 (23 residues), see Phobius details amino acids 608 to 630 (23 residues), see Phobius details PF00512: HisKA" amino acids 677 to 743 (67 residues), 65.6 bits, see alignment 5.1e-22 PF02518: HATPase_c" amino acids 790 to 897 (108 residues), 93.5 bits, see alignment E=1.8e-30 PF00072: Response_reg" amino acids 923 to 1033 (111 residues), 85 bits, see alignment E=6.4e-28

Best Hits

KEGG orthology group: None (inferred from 58% identity to hse:Hsero_2636)

Predicted SEED Role

"Two-component hybrid sensor and regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0X3 at UniProt or InterPro

Protein Sequence (1127 amino acids)

>PS417_11590 ATPase (Pseudomonas simiae WCS417)
MHPPSGTQRIVKIRRDYNTWVADETMEDYALRYTPKSFRKWSELRIANTALGAVSFLALE
AIGGVLALNYGFTNTFWAILAISVVIFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTI
TSLIYASFTFLFFALEAAIMALALELYFHIPLALAYVICSLLVIPLVAYGVTLISRLQLW
TQPIWLLLLVLPYGFVGWKNPDAFSDWTSFVGRSGDGGGFNLLAFCAACTVALSLVTQIG
EQVDYLRFLPEKTAANRKRWWAALLCAGPGWIIPGALKMFAGAFLAFLALQHEIPMERAA
EPTQMYLVAFRYVFSSPEWALGAMVLFVIISQMKINLTNAYAGSLAWSNFFARVTHSHPG
RVVWLVFNVAIALMLMELGVFDVIDQVLGLYANIAIAWIGTLVADLVINKPLGLSPRHIE
FKRAHLYDINPVGVGSMLIASLLSILAHFGLFGALAQAAPPFVALSTALVMAPLLAWLTQ
GKYYIARTSDVQLIHPVAPATHAVCGLCSNPFETADMAFCPAYSTPICSLCCSLDARCGD
RCKPHARLVTQFEGVLRWLLPNTMMPRLHTRLAHYLGLLLALVLMLAGALALIYVQAAQG
LPHSETLYQAFFKAFLTLSVLAAVLAWWVVLTRESRGVAQEESDRQTLLLMQEIDAHSLT
DQALQQAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQILQRDSAMPEQHQDALATI
LRSGSHLVSLIDGLLDVAKIEAGKLRLELTEIPFPELLHDLEQMFTPQAHDKGLRFRLDC
VGKIPAVVRGDEKRVRQILINLLGNAVNFTDSGEVRLRVSYMRETANFEIIDTGIGIDPG
QLERIFQPFERGDLMRQDNGVGLGLTITRMLTALMGGELRVTSELDKGTCFQVRLFLSQV
RAPQAVVHVEHDIIGYQGERRRILVVDDHVDHRKVLSGMLTPLGFEVIQASNGQDAIRQV
ALLAPDLILMDLSMPTLDGYETSRLIRRNALCTAPIIVISANAFTDDRERSIAAACNDYL
AKPVRTPELLGRLQQHLDLHWLRRTQRSIPPPPPRVLPGAEDLAVLAELSAIGYVRGLHE
KLDTILAQQPDTEPFISKVRGLLKGFRLDELNRTLKEAEDECTHPQH