Protein Info for GFF2267 in Variovorax sp. SCN45

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 10 to 33 (24 residues), see Phobius details amino acids 37 to 38 (2 residues), see Phobius details amino acids 40 to 69 (30 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details amino acids 229 to 247 (19 residues), see Phobius details PF01925: TauE" amino acids 16 to 245 (230 residues), 112 bits, see alignment E=1.8e-36

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 94% identity to vpe:Varpa_5076)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>GFF2267 Integral membrane protein (Variovorax sp. SCN45)
MVFPLITDPYFYAVAIPAVLLLGISKSGFGAGFGSLAVPLMALAVTVPQAAAILMPLLLL
MDVLGLAAFRRDFDRSLLKFLIPFGLLGTVVGTLLFRMLSAHTVAGIVGVFTLLFLAQRL
LFPPKPDDPLPSRGVGAVLTTVSGFTSFIAHAGGPPINAYVIPLRLKPVIFTATMAYFFF
VVNLSKWIPYAWLGLIDFRTLATSLVLMPIAPFGVWVGIRIARRIDATWFYRFVYLGMLL
TGLKLVYDGFIG