Protein Info for GFF2263 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 transmembrane" amino acids 33 to 60 (28 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details PF07681: DoxX" amino acids 32 to 111 (80 residues), 54.8 bits, see alignment E=6e-19

Best Hits

KEGG orthology group: None (inferred from 82% identity to vpe:Varpa_5093)

Predicted SEED Role

"DoxX family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>GFF2263 putative membrane protein (Variovorax sp. SCN45)
MNTQATAANTPRAPIASPLSALSPTTLDDSGKLLIRVAVGFLVLLHGILKLSAGVGFIAG
MLAKSGLPGGIAYLVYVGEIVAPLLMIAGLFTRAAAGVVVINMLVAFGLVHMADLFALTK
QGGWALELQGLYLFGALTVVLLGAGRFSIGGKNGRWN