Protein Info for GFF2263 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1150 transmembrane" amino acids 125 to 144 (20 residues), see Phobius details amino acids 164 to 188 (25 residues), see Phobius details amino acids 402 to 429 (28 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1150 amino acids)

>GFF2263 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MEHQEHVILVHGTGASAPSDAGEAWWQRAGVLWPELAEWGFAPECFIWSGDNSERARRQA
GRQLALRIRAIASEGERVHLVGHSHGGSVIAHALGTLPGSALDAVQSWTSVGTPYLRYGL
RLPRLLFDALVLLGSGLVLAIALLTLRDVDIGFAWEHDKPITALWFALLALPLVAAILTG
GSLLPFGLQLLRRSRINKLASRRDRHLALWSRQDEPIIGLRASGSFSLKILGGGSVSTLG
AMVRPLATATNQFVNNMVSRALQGSNIAHLEMRAAASALSQELAHHPLPQDIDDELIFRA
NQRAAVLGLRVREILSSGRDPVTGFSDLQRSAATAFTFNELVHTTYFQSRDCINLILHHV
LRHSGTSPAPGLRDSLASWYGTRFAGSTPCPDTYLPGNRMGFAVAAGVAGFATALSLNVV
SLSAVHAWVLAPTTPRYHIDDLINARRLAVALGSVLPAESLEQAGSLGMQGGIYLSFGVE
PDLSILHPYLESIVRANQLERLVESVFQLDTPELRTLFYAYGFPLLLGAADLDQMRWLSQ
SRLLPGLGNPGLFGANRVEPDFSYPVVDEFVQRAAARGMLDESLFVAAINTCPKGSLCRA
RAHMSAVRTLALAGTAAEHKYLFDLPAAFVNAMLAGQNGENPVSVREPLLQKWWSSDEDL
PFVVWLSQLQAWDHVAIHTRHVSATSERVNFAWAEFDKAIRRGLEHPEGETLNQILSFIT
RIPWREQLPEDVLQTVRSLLDKQIAALDTHTPVVSKRTFDRFTAAEKSKLLCSSLVDLDS
EAFESRLAEIKQEGARCPVEQRDHRRKGRAHDRFERFLEATTLFGEDGILQNMVRLQLAY
LPASFAELPRKVLFDSLRKAVCKPVDEISDFDTGDLDVEELAAALRFLGKPLAQDPDVAA
WATLMTSSEPCSQWASADSDAREEAVKTGRVINFQIIDWLHTADPVEALERMQKFSGTWG
GPVTSVPFNGPGVDQFAAWFHSKLYSTDALYITHTAAPRFRIMRRASLFRLASCELAYGS
TQRADRLASLAARSGQRIRQHAPPKDAMQAIRAEAEYFALRDDWRRSTSVCERCDARDML
RASADLIVPLSRRHLRGPAPKPSYCEDITDEAFKILIESQEQVEKHAEEEALRRAAALNR
SAGPAPDSLE