Protein Info for PS417_11515 in Pseudomonas simiae WCS417

Annotation: sugar ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01547: SBP_bac_1" amino acids 44 to 327 (284 residues), 209.7 bits, see alignment E=1e-65 PF13416: SBP_bac_8" amino acids 44 to 346 (303 residues), 102.7 bits, see alignment E=3.1e-33

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2473)

MetaCyc: 74% identical to polyol ABC-type transporter periplasmic substrate-binding protein (Pseudomonas fluorescens)
7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]

Predicted SEED Role

"Various polyols ABC transporter, periplasmic substrate-binding protein" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.M2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2S2 at UniProt or InterPro

Protein Sequence (436 amino acids)

>PS417_11515 sugar ABC transporter substrate-binding protein (Pseudomonas simiae WCS417)
MSKLPQALFLLSGLALAIPSHAADTVTIATVNNSDMIRMQRLSKVFEEQHPDIKLNWVVL
EENVLRQRLTTDIATQGGQFDVLTIGTYETPLWGAKHWLEPLTQLPPDYDADDIFPSVRQ
GLSVNNTLYALPFYGESTVTYYRTDLFKQAGLSMPAHPTWSQLGEFAAKLTAKDKGQYGM
CLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWTAAANFYVNTLKQYGPPGVS
SNGFNETLALFNSGKCAIWVDASVAGSFTTDKSQSKVADSVGFAAAPTEVTDKGSSWLYA
WSLAIPATSKHKDAAKAFISWATSKDYIQLVADKEGITNVPPGTRQSTYSEAYLKAAPFA
QVTLEMMKHADPAHPSAKPVPYVGIQYVTIPEFQAIGTSVGKLFSAALTGGMSVDQALLD
AQSTTEREMKRAGYPK