Protein Info for GFF2252 in Xanthobacter sp. DMC5

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 TIGR00634: DNA repair protein RecN" amino acids 1 to 558 (558 residues), 452.7 bits, see alignment E=1.2e-139 PF13476: AAA_23" amino acids 5 to 52 (48 residues), 38.9 bits, see alignment 2.3e-13 PF02463: SMC_N" amino acids 14 to 505 (492 residues), 48.6 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 84% identity to xau:Xaut_0331)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>GFF2252 DNA repair protein RecN (Xanthobacter sp. DMC5)
MLATLSIRDIVLIEKLDLTLSEGLTVLTGETGAGKSILLDAVSLALGGRGDGALVRHGQP
KGQVTLTFDLALDHPAHDILAAAELPDEGPLVIRRIQMADGRTRASVNEEAVSVQTLRLI
GASLIELHGQHADRAMVDAASHRLLLDAFGGLAAQVAAVGDLWRAWRTALAEAKDERERL
EIAAREADFIRHAVEELSALGPEPGEELALSERRTAMMRSEKIAGDLDEALDAVSGGSSP
IPSLAAAVRRLERRAGEAQALVRPAVEAIDQALDALETARQHLEAARADAAFDPRELERI
EERLFALRAAARKYHVSADDLPALAARYQSDLERLDRSAATLARLEASVNEAGAAYHAAA
EELSRARHSAAAVLDKAVAAELPPLKLERASFITRVTSDPAAAGPAGHDQVEFWVRTNPG
TRPGALMKVASGGELARFLLALKVVLADRGSAPTLIFDEIDTGVGGAVADAIGQRLGRLA
ERVQVLCVTHAPQVAARARNHLLIAKASAQDVVDPDAPVTTRVNALTASTRREEIARMLA
GATVTQEARAAADRLLKAAR