Protein Info for GFF2250 in Variovorax sp. SCN45

Annotation: Putative stomatin/prohibitin-family membrane protease subunit aq_911

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF01145: Band_7" amino acids 152 to 323 (172 residues), 89.1 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: None (inferred from 89% identity to vap:Vapar_4422)

Predicted SEED Role

"Putative stomatin/prohibitin-family membrane protease subunit aq_911" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>GFF2250 Putative stomatin/prohibitin-family membrane protease subunit aq_911 (Variovorax sp. SCN45)
MLGFNRITIKKNERALLLRNGDFEQLLGAGKHWVFSRFDKIQLQRFALTEPAFEHELVDY
FLAQEPELVEREFVQVSLGETEVGLRLEDGVLVQILPPATRKLYWRGLREQRIDVIDVAE
DARLPAELVSKLQSVALRPRAVAGLDGVLLVQVPEFHVGVLTLQGQMQELLQPGNHGFWR
FNRQVAVTCVDMRSQIAEVSGQEILTRDKVGLRLNMSAVWRFTDVRQAMAQMPKPADHVY
RELQFGLRAAVGEQTLDALLENKAAIDQTVLAQVRERIEGSGIALESVGVKDIILPGEMK
TILAQVVEAEKSAQANVIRRREETAATRSLLNTAKVMEGNPVALRMKELETLERVAERID
KISVIGGLDQVLNGLVTLRPNAP