Protein Info for PS417_11345 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF08479: POTRA_2" amino acids 35 to 108 (74 residues), 60.4 bits, see alignment E=1.2e-20 PF03865: ShlB" amino acids 171 to 489 (319 residues), 90.2 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU2433)

Predicted SEED Role

"Hemolysin activation/secretion protein associated with VreARI signalling system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJY8 at UniProt or InterPro

Protein Sequence (527 amino acids)

>PS417_11345 membrane protein (Pseudomonas simiae WCS417)
MEHLFKLTLALCCVTLGSLAQPVSAEEDEGVRKVDVNEYFVRGNTVLDAATIEEAVYPFL
GPQKTLGDIEGARDALQKIYQSRGYQSVFVELPEQKVDDGIVYLQVSETKVGRVRVVGAK
HYSPVEIREQVPALEEGAVPDFATVQTQLAGLNRGAGRQVTPLVREGQRPGTMDVDLQVE
DQNPWHASLGLNNDYSADTEKLRSVATLGYDNLWQLGHSIALTYFTAPQDTENAKVWSGS
YSAPLNERWTLQFSGYQSDSNIATIGGSNVLGKGHSYGVSAIYNLPAAGNWANSFSLGVD
FKDFDEQMKFGASSDQVPLKYAPFTLGYNGFRYTEQSQLGLGLNLVVGTRAFFGYGSDAE
AFEYKRYKASASFAVLKGDLNYTYTFANDWQSATKGGFQLASGPLVSNEQYSAGGATSVR
GYLAAERTGDEGYLLSQELRTPSLAKLLGSYVQEWRFYAFAEGARMRLHDPLPEQEDEYS
LASVGLGTRASLSKWLSGSLDWGYPLLDGPNTQKQDSRLHFSVQATF