Protein Info for GFF2212 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF01636: APH" amino acids 31 to 259 (229 residues), 150.3 bits, see alignment E=3.9e-48

Best Hits

Swiss-Prot: 100% identical to RDOA_SALTY: Serine/threonine protein kinase RdoA (rdoA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 99% identity to seh:SeHA_C4323)

MetaCyc: 86% identical to stress response kinase A (Escherichia coli K-12 substr. MG1655)
2.7.11.d,2.7.11.11,2.7.12.1,2.7.11.12,2.7.11.17,2.7.11.1,2.7.11.13,2.7.11.22,2.7.11.21,2.7.11.34,2.7.11.31 [EC: 2.7.11.1, 2.7.11.11, 2.7.11.12, 2.7.11.13, 2.7.11.17, 2.7.11.21, 2.7.11.22, 2.7.11.31, 2.7.11.34, 2.7.11.d, 2.7.12.1]

Predicted SEED Role

"YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling"

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.11.1 or 2.7.11.11 or 2.7.11.12 or 2.7.11.13 or 2.7.11.17 or 2.7.11.21 or 2.7.11.22 or 2.7.11.31 or 2.7.11.34 or 2.7.11.d or 2.7.12.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>GFF2212 YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNDNAFTFQTLHPETIMDALFEQGIMVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPE
RWSVDQIREEHQFALELVKDEVPVAAPLAFNGQTLLAHQGYHYAIFPSVGGRQFEADNID
QMEAVGRYLGRLHQTGRKRPFTFRPDIGLAEYLFEPRQVFEDAALIPSGQKAAFLKATDT
LLSAVTECWRTDFATLRLHGDCHAGNILWRDGPLFVDLDDARNGPAIQDLWMLLNGDKAE
QRMQLETIIEAYEEVSEFDTAEIGLIEPLRAMRLVYYLAWLIRRWGDPAFPKNFPWLTGE
DYWQRQTTTFIEQTKILHEPPLQLTPMY