Protein Info for GFF2200 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1004 PF04313: HSDR_N" amino acids 11 to 194 (184 residues), 111 bits, see alignment E=1.4e-35 TIGR00348: type I site-specific deoxyribonuclease, HsdR family" amino acids 13 to 691 (679 residues), 480.2 bits, see alignment E=5.8e-148 PF04851: ResIII" amino acids 250 to 414 (165 residues), 60.8 bits, see alignment E=3.1e-20 PF18766: SWI2_SNF2" amino acids 254 to 480 (227 residues), 223.9 bits, see alignment E=4e-70 PF22679: T1R_D3-like" amino acids 594 to 672 (79 residues), 73.7 bits, see alignment 4.9e-24

Best Hits

Predicted SEED Role

"Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)" in subsystem Restriction-Modification System (EC 3.1.21.3)

Isozymes

Compare fitness of predicted isozymes for: 3.1.21.3

Use Curated BLAST to search for 3.1.21.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1004 amino acids)

>GFF2200 hypothetical protein (Xanthobacter sp. DMC5)
MTQGPEWHFAERPAIERLQAMGYAVVPPADHAGLRDGDNQVLFRPHLVEALMRINGIDEA
AAKAAYGELAGIADNEAWLKVLRGDYSRKIDGFDTRQTLRVIDFLTPANNLFTVTSQLRV
KAEKTRRPDLVIHVNGIPLVVIEAKSPLNVKDKTGEAFEQIKQYEQDIPRLFASNAFNMV
TDGALVLYGATGAPSKYYAEWRDPWPKAEADFADPLAKGLWCLLEPARLLDLLAHYIVFE
KTDAGTIKKMCRYQQFRAVNRMVARVLEGKHRQGLIWHTQGSGKSLTMVFAALKLKTHRT
IASDALTNPNILVLTDRIDLHGQISGTFLACGLPNPTAIGSIKDLHTLIGSGQDGLTALS
TIFKFQGSTQAVANSANWIVMVDEAHRTQEKDLGAALRATLPDARFFGFTGTPVKKDDKD
TYVNFGVPGEAYLDKYGIDDAVADGATVPIYYTGRKTDWQMDEARIDILFDTWFAELDDD
RLNEIKKRGVEIEDLVKHPRRIELIAYDIWTHFKAYARPDGFKAQIVAIDREAVILYKRA
LTRVIADDLQGEGMPAEAALARADAMSACVYSINQEDHKPSEDARRQDIRAALVENYLDA
EAEKLAKKAFGRAGEDPQFLIVCDKLLTGFDCPIESVMYLDKPLKEHGLLQAIARTNRVS
DARKRNGLIVDYIGVSAHLEAALASYRADDVKNAMRDLDDLRSQLRAAHAAVAAMLRPVA
RTARDRSGWEKEFNAFATALGSEDQWFTFKGRARAFIALYETLSPDPSVLDFTADLKWVA
SFLLFGTQRFEKRQAFDQMSYSEKIREMLDTHLDATGLSVTVKLRHITDPGFWDDFDAEG
KTDEELMTAAIRKTTELRKTVSERIDDSPHQYGKFSERLRQLLERMESAQLSWADKLRAA
EDLARDIAAEDGAHVEAGLSAGAFGVMQILAGFGAGQQAGELATRFEALYTDPATAPRGW
WEKDGLRKDLRQQVRSMAHLAGLTQLKDIPDQVEAYALKHFVEP