Protein Info for PS417_11210 in Pseudomonas simiae WCS417

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 75 to 92 (18 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details PF07681: DoxX" amino acids 11 to 92 (82 residues), 45.2 bits, see alignment E=6.3e-16

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU2406)

Predicted SEED Role

"DoxX family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2N0 at UniProt or InterPro

Protein Sequence (128 amino acids)

>PS417_11210 LysR family transcriptional regulator (Pseudomonas simiae WCS417)
MNESKTQDIGLLFLRGSGALFLLWVHGLPKVLNYSEQLKVIEDPFHLGAHVTLLLAIFAE
VLCPLLIVAGVLVRLACLPILAVLLIAMLVVHPEWTLFEGQFGWLLLIIFTSVLIAGPGR
LVLNQRFS