Protein Info for PS417_11200 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 203 (183 residues), 37.3 bits, see alignment E=1.6e-13 amino acids 218 to 394 (177 residues), 33.4 bits, see alignment E=2.4e-12 PF06779: MFS_4" amino acids 24 to 383 (360 residues), 245.1 bits, see alignment E=1.5e-76

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU2404)

Predicted SEED Role

"Nitrite extrusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TTP7 at UniProt or InterPro

Protein Sequence (410 amino acids)

>PS417_11200 membrane protein (Pseudomonas simiae WCS417)
MLDTHAPPRRSVWLPIFAGLCASLVSIGLARFAYTPLIPTLIQAQWFSANDVVYLGAANL
VGYLIGALIGRPIAQRTSNKTALRMMMVAVTLAFFACGFPLSVVWFFAWRLLSGIAGGAI
MVLVAATVLPHVPAARRGLASGAIFLGIGLGIAGSGTLVPPLLNLGLQQTWFGLGLLALV
LTGASWFAWPTGTLHEAAAPTGTSAPTPSGVYLLFAQYAFMAAGLVPAMVFLVDYVARGL
GDGAHIGAMIWVMYGLGAIVGPVTYGFLADKLGARLSIRVVLVVQAIAVGLLPFTGSFTA
LAVLAVVLGSFPPGIVPLALARVHELLPNHHQQHVAWSRATVSFATFQALSGFAYSALFN
SSGGQHALLFMIAAGAIVVALALELGMIVLNRRPLDTVPTHTLIAAGNLK