Protein Info for GFF2193 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2017 transmembrane" amino acids 1763 to 1781 (19 residues), see Phobius details amino acids 1865 to 1887 (23 residues), see Phobius details amino acids 1904 to 1918 (15 residues), see Phobius details PF18834: LPD22" amino acids 36 to 125 (90 residues), 58.4 bits, see alignment (E = 3.6e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2017 amino acids)

>GFF2193 hypothetical protein (Sphingobium sp. HT1-2)
MTDRRGDFTSSLMDAGKVDTDPLREMIRTRRDAAISRRVQDANAEQAARVSMLARELDYP
ESFVAADLPGFEARAKSYRAQGVISQYPAVGAWSVKGSNADIAADDYDNLGLFGKAFYTL
KGVGKSAVAGSYEYLLGGSAGFVRGLSETAEENSPIAWAERKAFGGSVESLIASGSKAVQ
DWASDKASQWRTRSGNRYVDAAFSGIESAPMVLGTVGTSLLAGPQAGASFAGASVAGTEF
KAARDKGLNPFSAQGYALTQGAIELVTERIPLGRLMGDVQAGSALTKMLRRQLVPEVLGE
QAATILQDLNETATLHPEKTLGDYISERPAAAVDTLIATLAGMGTTVAVTKAAEATARGG
EKLLARRRDAAEARANGAFLDEIAQATTQSKTATRAPDAIADLVQQLGEDSGVEEVYIPA
EAVRSYMQSDMYVGDLDAWRAQIDEAEITGGDLVLPVGEVTRLSQSAGWETLKSEMRLSP
GGMSLREAEAFNEAWADAMEELSESVAQQVEDARQAEAPREALLQTVTDKLTSAGMSPSM
ARQNAEFMTQRAVTRASRMGRELTGQEYDGLDVRLVLPENIAAVQKADQLDVTIDVMKRR
KDPAQSLGPSLMEFIARGGGIVDTGGDLRAMGADAWHRGKPGRRKLVKDQGELIDEGGLG
ENEYSADAWAARAWEAGYFPEFGDQRPAANDLLDAVSEGVAGRDRTLVARDKTIRDAAEE
LRALLENRGIDPDAANRSDIRKAVEAYAAEQAEGDALMQGEDSPRGRILFPGGQSASAII
ELYQTQNQSTFLHESGHLWLEELREDAADPEAPQQVRDDWQIVQDWFAAAGHPIEDGKIP
VEAHELWATGVEKYLMEGRAPSPGLQRLFQTFKAWLLSVYNSVSRLQSPISDEVRDVMDR
LVASDEELADAIAAQHIEALFPQKPAAMTAAEYDAYKDMTIAARQEAQTRMLAKTMNAVK
RRVTKEWREREEDVRDTVTARIDALPEFRALRMARETPLDTQWIKDLLGEDAASMLPKDF
KKLHRENGANPDAVAELTGYSSGSDMVRALMGIEIRRRELREAGDKRSVRKATIDQEVSQ
IMLERYGDPFTDGSMEQEALAAVQSDRMGEVMGAELRVLGRTTGQRVTPYSVAKSWAERQ
VMEGKVREVASRSAIIRYERAAAKAGKAAMDAVIAGDHEEAFRQKQSQMLNNALIAAARR
GADNVDEVVSRLEKWAKRRTVKSVDQDYLERAQLLLEQVEMKERTQRSLNRQESFEAWAA
QRQAEGYDVVAPPSFAESLGRTHWSRLTVGQLLSLNDAVQQIIHLGRHKQSLLDAQEQRE
YEAVVSDTVGQIEGLISTGDLKAIPENRTFLEPGFFSRAKASILSIDASLLKMETVFDWL
DGGKFGMFKRVVFQRIVDAQERRRKMTRAIVDALEKAQAEVPKEARKRWSQKVSIPFIDP
RDGRQAVMTRDQLISMALNLGNEGNAQKLAGGYGWSEQSMLDMLNQELTPAEWQYVQKVW
DTIDTLWPEIAALERRINGVEPAKIEAREVQTNAGTLRGGYYPVVYDTSRDLRVEKLTAI
DSDQLFSNGYKRASTRAGSTNERTEVRDMPILLSPSVLSRHVTEVVHDITHREAMMDTHK
FLNDPRIVKAVRGVMGEDIQKQFNPWLHHISNELAYEAQGLGGFERALKTLRVNATFTGL
AFRWTTVAMQISGFVQTAEVLGPTALAKGVFAYGQHPISSFPFVLERSQEVRSRMDTMDR
DMRDMLSNESRLGKTVSDIRAAGFMAIGAVDRFVSVVSWMAAYNKSLETGAAEEVAIAYA
DEVIRKSQGSGAAKDLAAIMRGKGSAGEMLKSITPFYSFMSAYYQRQRNFARDTGKAFRR
RDAAAIPGLVTRFLLLYVFPALAAEWLAGRWPDDDDEESFTQWALQTMALNALGPLPVVR
DLANIAVKGFDSSVSSVDRFLSTASRTIKDMQRLADGEDTKRATRNAMEVAGYFGAPTSG
QMGATSQFLVDVYSGDQHPEDLGDWWEGLTKGKVDDK