Protein Info for GFF2185 in Variovorax sp. SCN45

Annotation: Acetyltransferase, GNAT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 PF13302: Acetyltransf_3" amino acids 14 to 150 (137 residues), 68 bits, see alignment E=1.4e-22 PF00583: Acetyltransf_1" amino acids 42 to 148 (107 residues), 25 bits, see alignment E=2e-09

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_5176)

Predicted SEED Role

"GCN5-related N-acetyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>GFF2185 Acetyltransferase, GNAT family (Variovorax sp. SCN45)
MAFVEPVTLKARDLALVPLSLEHEDGLRAAAADGELWKLRVTSVPEPENTRAYIETALKT
PDRFAFAVTEAASGKVLGTSSFHDILPTVKRVEIGYTWYAAHCQRTHVNTTCKLLLLTHA
FDVLGCNTVGWRTDNFNFASQRAIERLGAKKDGVIRGHAMRRDGTIRDTVMYSLRAGEWP
EVKAQLLYLLDKPRG