Protein Info for GFF2146 in Sphingobium sp. HT1-2

Annotation: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 PF00364: Biotin_lipoyl" amino acids 5 to 77 (73 residues), 68.4 bits, see alignment E=5.7e-23 PF02817: E3_binding" amino acids 148 to 173 (26 residues), 30.5 bits, see alignment (E = 5.1e-11) PF00198: 2-oxoacid_dh" amino acids 202 to 429 (228 residues), 259.7 bits, see alignment E=3.4e-81

Best Hits

KEGG orthology group: K09699, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC: 2.3.1.168] (inferred from 81% identity to sjp:SJA_C1-13010)

Predicted SEED Role

"Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)" in subsystem Isoleucine degradation or Leucine Degradation and HMG-CoA Metabolism or Valine degradation (EC 2.3.1.168)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.1.168

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>GFF2146 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) (Sphingobium sp. HT1-2)
MALFTFKLPDIGEGIAQAEIVGWHVQVGDRVEEDQPIADMMTDKATVEMESPVAGTVVRL
AGEPGDQVSIGSMLVEIETEGEGAAAAPAPSVETVEASIDAPLPSREGPGVGGEQSELPA
VEPEAPASPVPTPNPSLEGRGNDVAAPILASPAVRARARELGIDLALVKPNGDHIRHADL
DAYLLYGSGQGYRPAGRVAPRSDEQVKVIGMRRRIAENMAASKRHIPHFTYVEEIDVTAL
EEARAQLNAHRGDRPKLTMLPLLIVAICRTLPDFPMLNARYDDEAGVVTRHGAVHLGMAT
QTDAGLMVPVIRDAQDRNVWQLATEIRRLADAARSGKATSAELSGSTLTLTSLGPLGGIA
TTPVINRPEVAIIGPNRVIERPMFRGKEIVAAKLMNLSISCDHRVVDGWDAASFVQAVRK
LLETPVLLFEG