Protein Info for GFF2139 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG005080: Possible exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 1208 to 1230 (23 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 2 to 1262 (1261 residues), 1668.1 bits, see alignment E=0 PF13116: DUF3971" amino acids 504 to 786 (283 residues), 328.7 bits, see alignment E=3.9e-102 PF13502: AsmA_2" amino acids 1010 to 1252 (243 residues), 228.3 bits, see alignment E=1e-71

Best Hits

Swiss-Prot: 81% identical to YHDP_ECOLI: Uncharacterized protein YhdP (yhdP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 85% identity to cko:CKO_04654)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1266 amino acids)

>GFF2139 FIG005080: Possible exported protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VRRLPGILLLTGAALIVIAALLVSGLRLALPHLDAWRPAILNKIESVTGVPVAASQLSAS
WQNFGPTLEAHNIHAALKDGGELSIKRVTLALDVWQSLLHMRWQFRDLTFWQLNFRTNTP
LQSSDGEGIETSRLSDLFLRQFDHFDLRDSQISFLTLSGQRAELAIPQLTWLNGKERHRA
EGEVSLSSLTGQHGVMQVRMDLRDDDGLLNNGRVWLQADDIDVKPWLGKWMQDNVALQTA
RFSLEGWMTLSKGEIAGGDVWLKQGGASWLGDNTTHTLSVDNLTAQISREQPGWQFYIPD
TRITLDGKPWPSGALTVAWLPQQDVGGENHTRSDELRIRASNLELAGLEALRPLAAKLSP
VLGEIWQATQPSGKIATLALDIPLQATEKTRFQASWENLAWKQWKLLPGAEHFSGTLAGS
VEDGQMKVAMQQAKMPYETVFRAPLEIENGVATLSWLKNENGFQLDGRDIDVKAKAVHAR
GGFRYLQPTGDEPWLGILAGISTDDGSQAWRYFPENLMGKALVDYLSGAIQGGEADNATL
VYGGNPHLFPYKHNEGQFEVLVPLRNATFAFQPDWPALKNLNIELDFLNDGLWMRSDSVD
LGGVKASKLAAAIPDYSKEKLLIDADINGPGKAVGPYFDETPLKDSLGSTLAELQLDGDV
NARLHLDIPLDGEQVTAEGDVSLRNNSLFIKPLNSTLKNLNGKFSFVNGALKSGPLTANW
FNQPLNLDFSTTEGAKAYQVAVNLNGNWQPTRMGVLPPQLNDALSGSVTWNGKVGIDLPY
HADTTYHIELNGDLRNVSSHLPSPLNKPAGEAIPVNIQADGNLKSFALTGSAGSKNHFNS
RWLLNQKLTLDRAIWTTDSRTIPPLPAQQGVELNLPALDGAQWLALFQKGAADNVSSSAE
FPQRVTLRTPALSLGGQQWNNLSVVSAPSLNGTKIEAQGREVNATLLMRNHAPWLANIKY
LYYNPGVAKTHASSPTPTSPLASANTISFRGWPDLQLRCEECWLWGQKYGRIDGDFAIKG
NTLTLANGLIDTGFARLKANGEWVNAPGNERTSLKGSLHGSNLDTAAGFFGISTPIQNAS
FNVDYDLHWRNPPWQPDEATLNGILRTRLGKGEFTDLSSGHAGQLLRLLSFDALLRKLRF
DFRDTFSEGFYFDSIHSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRRLDMEAVVA
PEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDAPQINEVLRQP
RKESQQ