Protein Info for PS417_01080 in Pseudomonas simiae WCS417

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 8 to 395 (388 residues), 619 bits, see alignment E=1.6e-190 PF02771: Acyl-CoA_dh_N" amino acids 24 to 119 (96 residues), 42.4 bits, see alignment E=1.3e-14 PF00441: Acyl-CoA_dh_1" amino acids 239 to 369 (131 residues), 30.8 bits, see alignment E=4.7e-11 PF08028: Acyl-CoA_dh_2" amino acids 240 to 372 (133 residues), 69.1 bits, see alignment E=7.1e-23

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU0241)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8J3 at UniProt or InterPro

Protein Sequence (397 amino acids)

>PS417_01080 acyl-CoA dehydrogenase (Pseudomonas simiae WCS417)
MTFSHPVAVITSDEQALIVASDLAEDLRRDSAQRDRERRLPLPELEVFSRSGLWGISVPK
AFGGAGVSNVTLAKVIALIAQADASLGQIPQNHFYALEVLRVNGSPAQQKRLYAEVLAGQ
RFGNALAELGTKTAHDRVTKITRDGDGFRISGRKFYATGAIYAQRIPTSVVDEQGVQQLA
FVPRDSEGLSVIDDWSGFGQRTTGSGSVVFDNVWVAAQDVIPFQSAFERPTTVGPLAQIL
HAAIDTGIARAAFEDALHFVRTKTRPWIDSGTDKATDDPLTLKSFGHLSIRLHATEALLE
RSGEFLDRAQADSNAETVAAASIAVAEVRALSTEISLAAGSTLFELAGSQATLAEHGLDR
HWRNARVHTLHDPVRWKYHAVGNYYLNDENPPLRGTI