Protein Info for GFF2127 in Pseudomonas sp. DMC3

Annotation: Low affinity potassium transport system protein kup

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 633 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 296 to 320 (25 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 375 to 400 (26 residues), see Phobius details amino acids 406 to 424 (19 residues), see Phobius details amino acids 430 to 451 (22 residues), see Phobius details PF02705: K_trans" amino acids 22 to 473 (452 residues), 619.3 bits, see alignment E=3.3e-190 PF22776: K_trans_C" amino acids 486 to 633 (148 residues), 178.2 bits, see alignment E=9.6e-57

Best Hits

Swiss-Prot: 98% identical to KUP_PSEPF: Probable potassium transport system protein kup (kup) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K03549, KUP system potassium uptake protein (inferred from 98% identity to pfo:Pfl01_1192)

MetaCyc: 53% identical to K+:H+ symporter Kup (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-3

Predicted SEED Role

"Kup system potassium uptake protein" in subsystem Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (633 amino acids)

>GFF2127 Low affinity potassium transport system protein kup (Pseudomonas sp. DMC3)
MGQASSHAAGAEGSASRPLSMLVAAVGVVYGDIGTSPLYTLKEVFSGGYGVPVNHDGVLG
ILSLIFWSLIWVVSIKYMMFVLRADNQGEGGIMALTALARRAAAGRKRLRTLLVVCGLIG
AALFYGDSMITPAISVLSAIEGLGLAFEGIDHWVVPLSLVVLVALFLIQRHGTARIGILF
GPIMVTWFLVLGALGVYGISHTPEVLHALNPMWAVNFFVVHPGMGVAILGAVVLALTGAE
ALYADMGHFGRKPIARAWFLLVLPALVLNYFGQGALLLENPDAARNPFYLLAPSWALIPL
VGLSTLATVIASQAVISGAFSLTRQAIQLGYIPRMYIQHTSSDEQGQIYIGAVNWALMVG
VVLLVLGFESSGALASAYGVAVTGTMLMTTILVSAVMLLLWKWPPILAVPVLLGFLLVDG
LYFAANVPKIVQGGAFPVIAGIALFVLMTTWKRGKQLLVERLDEGALPLPIFISSIRVQP
PHRVQGTAVFLTARSDAVPHALLHNLLHNQVLHEQVVLLTVVYEDIPRVPPSRRFEVEAH
GEGFFRVILHFGFTDEPDVPQALKLCHLDDLDFSPMRTTYFLSRETVIASKLEGMARWRE
ALFAFMLKNANGNLRFFNLPLNRVIELGTQVEM