Protein Info for GFF2121 in Variovorax sp. SCN45

Annotation: Type IV fimbrial biogenesis protein PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1143 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 550 to 947 (398 residues), 114.1 bits, see alignment E=3.9e-37

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1143 amino acids)

>GFF2121 Type IV fimbrial biogenesis protein PilY1 (Variovorax sp. SCN45)
MNRSRKFLGTMLLGMLACAPWAAHAQLIISDTLTGASSSYDWQALNGACLTAGNDTGTIP
ACIGKKLTYYTQNNSLLVGGTNGRLPDTVGFGALRLTNGDITNGGSNGDNQTGAVVGTKT
FPTNQGLQVTFTTVTYGGDGNNGTGADGISFFLSDGKYAPSVGGLGGSLGYSCSNVNAQY
DGVVGGYLGIGIDEYGNFSNPGDNTNSGPGFKAGRISVRGAGNINWASLSAMDPVHYPPG
TILTPDQQKAAVQNTCKTGKVMDYSVTTKTKCDSNGNNCTAVATSTPSGKATATSLPDYP
LLLNGTAYSNLPAGLSISNQQGVNMPLRGKATPITYALQITQDGLLSLSYSVNGGAAQNV
INKQSITDTNGPLPDNFRFGFSAGTGGSSNVHEITCFKAAPVNQSSSSAGTNVQQSARVE
AGTQVYLAYYHQTNSWGELTAQDLVSDPTSGIVSINPIANWDASCVLTGGACQATTKTNT
AQTSANRTMLSWNGTGGIPFQWNKLSTTQQTALSAGDSTQTDIRLRYLRGDRSNELASSG
GTLRTRTGVLGDIIDSSPTWIGGPSLPYKGPWLDALYPKSTAAEPAGSYADFAGTTATTA
QGGRQNVVYIGANDGFLHGFRSGTYDASGNFVKTTNDGNEVLAYIPGAITKMIHSTTPGL
DFSSTQYSHNLYTDATPGTGDLYYGGAWHTWLVSGVGPGGSTTGPIGDKTTVASSVIYAL
DVTDPTQFSETNAASLVRGEWTSGTGTGAITCTGNANCGNNLGSTFGTPIIRRLHNGQWA
ALFGNGLNSSTGTAGLFVMLVDPATGGITFRFIDTGAGPTMTGTTVTARNGIAYVTSADL
DGDHVTDYVYAGDVLGNLWRFDLTSSDPTKWAASSAPIFKTAAGQPITTRVTVSSVLGIG
AAGQPGVVVSFGTGQQFPQTQVNSATYASATQALYGIWDWDMSGWNAKGGASAQYAALAS
PQTVDTTTLQAQSITATQPGSGSISGYRTLSTNKVCWKGSPSCKTGNTQFGWTLPLPSTG
NEQVIYNPTTAYGMLLVNTTIPAVSQVLTCDTQPAAGYTMAVSLNTGGAPGASFFGDQNG
NFVTYNGGIVSGIGLSATGTPSIVTANKWPYLVQQTVGGTGVVTKINPAANGKGKRLTWI
KLR